Merge pull request #211 from singjc/split/levels-contexts-fix

fix: use error estimation config in levels contexts

Author: singjc

pyprophet/levels_contexts.py

@@ -326,14 +326,14 @@ def infer_glycopeptides(
             "glycopeptide",
             density_estimator=config.density_estimator,
             grid_size=config.grid_size,
-            parametric=config.parametric,
-            pfdr=config.pfdr,
-            pi0_lambda=config.pi0_lambda,
-            pi0_method=config.pi0_method,
-            pi0_smooth_df=config.pi0_smooth_df,
-            pi0_smooth_log_pi0=config.pi0_smooth_log_pi0,
-            lfdr_truncate=config.lfdr_truncate,
-            lfdr_monotone=config.lfdr_monotone,
+            parametric=config.error_estimation_config.parametric,
+            pfdr=config.error_estimation_config.pfdr,
+            pi0_lambda=config.error_estimation_config.pi0_lambda,
+            pi0_method=config.error_estimation_config.pi0_method,
+            pi0_smooth_df=config.error_estimation_config.pi0_smooth_df,
+            pi0_smooth_log_pi0=config.error_estimation_config.pi0_smooth_log_pi0,
+            lfdr_truncate=config.error_estimation_config.lfdr_truncate,
+            lfdr_monotone=config.error_estimation_config.lfdr_monotone,
             # lfdr_transformation=lfdr_transformation,
             # lfdr_adj=lfdr_adj, lfdr_eps=lfdr_eps
         )