proteingym-base/.pre-commit-config.yaml at main · ProteinGym/proteingym-base · GitHub

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fail_fast: false

default_install_hook_types:
  - pre-commit
  - post-checkout
  - post-merge
  - post-rewrite

repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
  rev: v5.0.0
  hooks:
    - id: check-merge-conflict

- repo: https://github.com/abravalheri/validate-pyproject
  rev: v0.24.1
  hooks:
    - id: validate-pyproject

- repo: https://github.com/astral-sh/ruff-pre-commit
  rev: v0.11.7
  hooks:
    - id: ruff-format
    - id: ruff
      args: [--fix, --exit-non-zero-on-fix]
      types_or: [python, pyi]
      require_serial: true

- repo: https://github.com/astral-sh/uv-pre-commit
  # uv version.
  rev: 0.6.1
  hooks:
    # Update the uv lockfile.
    - id: uv-lock
    # Synchronize the dependencies upon branch checkout, pull or rebase.
    - id: uv-sync

- repo: local
  hooks:
    - id: pyrefly
      name: pyrefly type checker
      entry: uv run pyrefly check
      language: system
      types: [python]
      files: ^src/
      pass_filenames: true
      require_serial: true