tests

fix: address Dependabot alerts for mlflow, transformers, setuptools #972

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Run time

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Job	Run time
full-dep (macOS-latest)	34m 54s
packaging	4m 31s
full-dep (ubuntu-latest)	32m 54s
static-checks (codeformat)	10m 26s
hyena-dep	7m 12s
static-checks (mypy)	14m 9s
min-dep (ubuntu-latest, 2.8.0, 3.11)	8m 15s
min-dep (ubuntu-latest, 3.10, 2.9.1)	8m 26s
min-dep (ubuntu-latest, 2.8.0, 3.12)	8m 17s
min-dep (macOS-latest, 3.10, 2.8.0)	16m 48s
min-dep (ubuntu-latest, 2.8.0, 3.13)	7m 34s
min-dep (ubuntu-latest, 3.10, 2.8.0)	7m 54s
min-dep (ubuntu-latest, 3.10, 2.10.0)	7m 54s
full-dep (windows-latest)	53m 12s
min-dep (ubuntu-latest, 3.10, 2.11.0)	7m 22s
min-dep (windows-latest, 3.10, 2.8.0)	9m 19s
	3h 59m 7s