columns.csv

field,visible_on_portal,visible_on_download,visible_on_archive,machine_annotation_inat_relevance,machine_annotation_herbarium_relevance,in_situ_relevance,alias,definedBy,datatype,source,definition
annotationID,FALSE,TRUE,TRUE,REQUIRED,REQUIRED,REQUIRED,,https://biscicol.org/api/v1/inaan/ark:/92250/guid?info,keyword,system,The unique identifier of the phenophase status record in Phenobase.
scientificName,TRUE,TRUE,TRUE,REQUIRED,REQUIRED,REQUIRED,,http://rs.tdwg.org/dwc/terms/scientificName,text,user,The taxonomic name of the organism for which the record was made. Taxonomy follows that used in the source dataset.
taxonRank,FALSE,TRUE,TRUE,APPLICABLE,APPLICABLE,APPLICABLE,rank,http://rs.tdwg.org/dwc/terms/taxonRank,text,user,"The taxonomic rank of the organism for which the record was made, usually genus, species or subspecies."
standardizedFamily,TRUE,TRUE,TRUE,REQUIRED,REQUIRED,REQUIRED,gbifFamily,http://rs.tdwg.org/dwc/terms/family,keyword,system,"The standardized taxonomic family of the organism for which the record was made. This is currently resolved from the GBIF Backbone Taxonomy (https://doi.org/10.15468/39omei), using scientificName as defined by the source dataset."
genus,FALSE,TRUE,TRUE,APPLICABLE,APPLICABLE,APPLICABLE,,http://rs.tdwg.org/dwc/terms/genus,keyword,user,The taxonomic genus of the organism for which the record was made. Taxonomy follows that used in the source dataset.
trait,TRUE,TRUE,TRUE,REQUIRED,REQUIRED,REQUIRED,,https://biscicol.org/api/v1/inaan/ark:/92250/trait?info,text,user,The name of the primary phenological trait in the Plant Phenology Ontology (PPO) to which the phenophase status record was assigned.
traitUrn,FALSE,TRUE,TRUE,REQUIRED,REQUIRED,REQUIRED,,https://biscicol.org/api/v1/inaan/ark:/92250/traitUrn?info,keyword,user,The unique identifier of the primary phenological trait in the Plant Phenology Ontology (PPO) to which the phenophase status record was assigned.
mappedTraits,FALSE,TRUE,TRUE,APPLICABLE,APPLICABLE,APPLICABLE,,https://biscicol.org/api/v1/inaan/ark:/92250/mappedTraits?info,keyword,system,The names of all phenological traits in the Plant Phenology Ontology (PPO) to which the phenophase status record is related. These are generally parent classes of the primary trait.
mappedTraitsUrns,FALSE,TRUE,TRUE,APPLICABLE,APPLICABLE,APPLICABLE,mappedTraitIDs,https://biscicol.org/api/v1/inaan/ark:/92250/mappedTraitUrn?info,keyword,system,The unique identifiers of all phenological traits in the Plant Phenology Ontology (PPO) to which the phenophase status record is related. These are generally parent classes of the primary trait.
date,FALSE,TRUE,TRUE,REQUIRED,REQUIRED,REQUIRED,,https://biscicol.org/api/v1/inaan/ark:/92250/verbatimDate?info,text,user,The date that the observation was collected in the field.
year,TRUE,TRUE,TRUE,REQUIRED,REQUIRED,REQUIRED,,http://rs.tdwg.org/dwc/terms/year,integer,user,The calendar year that the observation was collected in the field.
dayOfYear,TRUE,TRUE,TRUE,REQUIRED,REQUIRED,REQUIRED,,https://biscicol.org/api/v1/inaan/ark:/92250/dayOfYear?info,integer,user,"The day of year, ranging from 1 to 366, that the observation was collected in the field."
latitude,TRUE,TRUE,TRUE,REQUIRED,APPLICABLE,REQUIRED,deimalLatitude,http://rs.tdwg.org/dwc/terms/decimalLatitude,float,user,The latitude at which the record was collected in the field. Datum follows that in the source dataset.
longitude,TRUE,TRUE,TRUE,REQUIRED,APPLICABLE,REQUIRED,decimalLongitude,http://rs.tdwg.org/dwc/terms/decimalLongitude,float,user,The longitude at which the record was collected in the field. Datum follows that in the source dataset.
coordinateUncertaintyInMeters,FALSE,TRUE,TRUE,APPLICABLE,APPLICABLE,APPLICABLE,positional_accuracy,http://rs.tdwg.org/dwc/terms/coordinateUncertaintyInMeters,integer,user,"Where latitude and longitude coordinates may not be precise, an estimate of the distance (in meters) that the true location of the collected record might be from the recorded latitude and longitude. Inclusion and calculation of this value varies by source dataset. "
collectionMethod,FALSE,TRUE,TRUE,APPLICABLE,APPLICABLE,APPLICABLE,basisOfRecord,https://biscicol.org/api/v1/inaan/ark:/92250/collectionMethod?info,keyword,user,"The type of collection method used to capture the phenophase status record. These include ""human observation"",""herbarium specimen image"" and ""live plant image""."
annotationMethod,FALSE,TRUE,TRUE,REQUIRED,REQUIRED,REQUIRED,,https://biscicol.org/api/v1/inaan/ark:/92250/annotationMethod?info,text,user,"The method by which phenophase status was determined, either directly by a human observer (""human"") or image analysis by a machine learning model (""machine"")."
dataSource,TRUE,TRUE,TRUE,REQUIRED,REQUIRED,REQUIRED,,https://biscicol.org/api/v1/inaan/ark:/92250/dataSource?info,keyword,user,The organization or data aggregation platform from which the record originated.
occurrenceID,FALSE,TRUE,TRUE,REQUIRED,REQUIRED,REQUIRED,occurrenceID,http://rs.tdwg.org/dwc/terms/occurrenceID,text,user,The unique identifier in the source dataset for the phenophase status record.
organismID,FALSE,TRUE,TRUE,NOT APPLICABLE,NOT APPLICABLE,APPLICABLE,individualID,http://rs.tdwg.org/dwc/terms/organismID,text,user,The identifier in the source dataset for the individual organism for which the record was made. This identifer is designed to be unique in some data sources.
verbatimFamily,FALSE,TRUE,TRUE,REQUIRED,REQUIRED,REQUIRED,,http://rs.tdwg.org/dwc/terms/family,keyword,user,The taxonomic family of the organism for which the record was made. Taxonomy follows that used in the source dataset.
verbatimTrait,TRUE,TRUE,TRUE,APPLICABLE,APPLICABLE,APPLICABLE,,https://biscicol.org/api/v1/inaan/ark:/92250/verbatimTrait?info,text,user,"The term used in the source dataset to describe the phenological trait or ""phenophase"", and the value (following the = sign) used to indicate presence or absence."
locationID,FALSE,TRUE,TRUE,NOT APPLICABLE,NOT APPLICABLE,APPLICABLE,,http://rs.tdwg.org/dwc/terms/locationID,text,user,The identifier in the source dataset for the location at which the record was made. This identifer is designed to be unique in some data sources.
recordedBy,FALSE,TRUE,TRUE,APPLICABLE,APPLICABLE,APPLICABLE,,http://rs.tdwg.org/dwc/terms/recordedBy,text,user,The identifier in the source dataset for the person by whom the record was collected. This identifer is designed to be unique in some data sources.
sourceRecordUrl,TRUE,TRUE,TRUE,APPLICABLE,APPLICABLE,APPLICABLE,inat_URL,https://biscicol.org/api/v1/inaan/ark:/92250/observedMetadataUrl?info,text,user,The landing page at which the record can be found at its original source. This may include useful ancillary data not ingested to Phenobase.
modelUri,FALSE,TRUE,TRUE,REQUIRED,REQUIRED,NOT APPLICABLE,,https://biscicol.org/api/v1/inaan/ark:/92250/modelUri?info,text,user,"Where annotation method is by machine, the landing page describing the version of the machine learning model that was used."
accuracyFamily,FALSE,TRUE,TRUE,APPLICABLE,NOT APPLICABLE,NOT APPLICABLE,accuracyExcludingUncertainFamily,https://biscicol.org/api/v1/inaan/ark:/92250/accuracyFamily?info,text,user,"Where annotation method is by machine, the accuracy of the model in detecting presence of the trait for the taxonomic family of the organism for which the record was made. This metric is included because certain plant structures can be very difficult to detect or distinguish for some plant families (e.g. tiny flowers in grasses). Inclusion and calculation of this value varies by source dataset. "
accuracyIncludingUncertainFamily,FALSE,FALSE,FALSE,APPLICABLE,NOT APPLICABLE,NOT APPLICABLE,accuracyFamily,https://biscicol.org/api/v1/inaan/ark:/92250/accuracyIncludingUncertainFamily?info,text,user,"A metric of accuracy for the annotations of all records (equivocal and unequivocal) based on expert, gold standard observations. This is in contrast to the accuracyFamily field which is a metric of accuracy for annotations of only the unequivocal records, based on expert, gold standard observerations."
proportionCertaintyFamily,FALSE,FALSE,FALSE,APPLICABLE,APPLICABLE,NOT APPLICABLE,,https://biscicol.org/api/v1/inaan/ark:/92250/proportionCertaintyFamily?info,text,user,The proportion of the number of low certainty annotations divided by all annotations for iNaturalist observations in the taxonomic family. A metric of how successful the annotation process for observations in that family.
countFamily,FALSE,FALSE,FALSE,APPLICABLE,APPLICABLE,NOT APPLICABLE,,https://biscicol.org/api/v1/inaan/ark:/92250/countFamily?info,integer,user,The number of records that were annotated at the taxon rank of family associated with the identified occurrence
predictionProbability,FALSE,FALSE,FALSE,APPLICABLE,APPLICABLE,NOT APPLICABLE,prediction_prob,https://biscicol.org/api/v1/inaan/ark:/92250/predictionProbability?info,float,user,"""A score from 0-1 which represent a scaled probability of presence or absence of a trait"""
predictionClass,FALSE,FALSE,FALSE,APPLICABLE,APPLICABLE,NOT APPLICABLE,prediction_class,https://biscicol.org/api/v1/inaan/ark:/92250/predictionClass?info,keyword,user,"a categorical description of the annotation outcome, in this case either ""Detected"" or ""Not detected"""
certainty,FALSE,FALSE,FALSE,APPLICABLE,APPLICABLE,NOT APPLICABLE,equivocal,https://biscicol.org/api/v1/inaan/ark:/92250/certainty?info,keyword,user,Certainy of machine observation (Low or High). This corresponds to Equivocal (Low) and Uniquevicol (High)
errorMessage,FALSE,FALSE,FALSE,APPLICABLE,APPLICABLE,APPLICABLE,,https://biscicol.org/api/v1/inaan/ark:/92250/errorMessage?info,text,system,Error messages from processing
taxonSearch,FALSE,FALSE,FALSE,APPLICABLE,APPLICABLE,APPLICABLE,,https://biscicol.org/api/v1/inaan/ark:/92250/taxonSearch?info,keyword,system,Normalized taxonomy search terms derived from available family genus species and scientificName values.