ingressing hcpya data

[bogpetre]

Hi

I noticed that there are plans to add support for ingressing hcpya data from the HCP minimally preprocessed data folder structures (rather than BIDS), but that there's no implementation yet for this. I'm interested in potentially using HCP preprocessed data and am trying to evaluate whether or not it's worthwhile to try to implement this ingressing functionality myself. I'm wondering if any work has been done on this yet, if there are an key difficulties you may have encountered that impeded its implementation thus far, or if there's ongoing work I should be aware of. Based on what I can see from the code base, it looks like nothing HCP specific has been implemented yet.

[arokem]

Hey @bogpetre : there's also functionality in DIPY to download processed HCP diffusion data from AWS and organize it in a (I believe) BIDS-compatible fashion.

[mattcieslak]

To run the recon workflows it would need to look like qsiprep derivatives, which will be a bit different from raw BIDS. @bogpetre if you're up for trying out a PR it won't be much different from the UKB workflow and I'd be happy to help

[mattcieslak]

This exists now! Please see https://github.com/pennlinc/ingress2qsirecon