From bf19be34f7c2e8c44abb473a64fdeb9fc30902cc Mon Sep 17 00:00:00 2001 From: Hiran Wijesinghe Date: Tue, 14 Apr 2026 11:35:22 +0000 Subject: [PATCH 1/4] bump copier template --- .copier-answers.yml | 4 +- .devcontainer/devcontainer.json | 46 +- .github/CONTRIBUTING.md | 2 +- .github/ISSUE_TEMPLATE/bug_report.md | 2 +- .../actions/install_requirements/action.yml | 34 - .github/dependabot.yml | 24 - .github/workflows/_check.yml | 27 - .github/workflows/_container.yml | 8 +- .github/workflows/_dist.yml | 13 +- .github/workflows/_docs.yml | 9 +- .github/workflows/_pypi.yml | 2 +- .github/workflows/_release.yml | 4 +- .github/workflows/_test.yml | 39 +- .github/workflows/_tox.yml | 8 +- .github/workflows/ci.yml | 39 +- .github/workflows/periodic.yml | 2 +- .gitleaks.toml | 19 + .pre-commit-config.yaml | 17 +- .python-version | 1 + Dockerfile | 45 +- docs/conf.py | 2 +- pyproject.toml | 179 +- renovate.json | 41 + src/fastcs_pandablocks/__main__.py | 3 +- src/fastcs_pandablocks/panda/blocks/data.py | 8 +- tests/conftest.py | 21 - uv.lock | 2793 +++++++++++++++++ 27 files changed, 3116 insertions(+), 276 deletions(-) delete mode 100644 .github/actions/install_requirements/action.yml delete mode 100644 .github/dependabot.yml delete mode 100644 .github/workflows/_check.yml create mode 100644 .gitleaks.toml create mode 100644 .python-version create mode 100644 renovate.json create mode 100644 uv.lock diff --git a/.copier-answers.yml b/.copier-answers.yml index c7a4be3..3549ddd 100644 --- a/.copier-answers.yml +++ b/.copier-answers.yml @@ -1,15 +1,17 @@ # Changes here will be overwritten by Copier -_commit: 2.6.0 +_commit: 5.0.2 _src_path: gh:DiamondLightSource/python-copier-template author_email: eva.lott@diamond.ac.uk author_name: Eva Lott description: A softioc to control a PandABlocks-FPGA. distribution_name: fastcs-pandablocks docker: true +docker_debug: false docs_type: sphinx git_platform: github.com github_org: PandABlocks package_name: fastcs_pandablocks pypi: true repo_name: fastcs-PandABlocks +strict_typing: true type_checker: pyright diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 979a89c..c12cce5 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -7,13 +7,29 @@ }, "remoteEnv": { // Allow X11 apps to run inside the container - "DISPLAY": "${localEnv:DISPLAY}" + "DISPLAY": "${localEnv:DISPLAY}", + // Put things that allow it in the persistent cache + "PRE_COMMIT_HOME": "/cache/pre-commit", + "UV_CACHE_DIR": "/cache/uv", + "UV_PYTHON_CACHE_DIR": "/cache/uv-python", + // Make a venv that is specific for this workspace path as the cache is shared + "UV_PROJECT_ENVIRONMENT": "/cache/venv-for${localWorkspaceFolder}", + // Do the equivalent of "activate" the venv so we don't have to "uv run" everything + "VIRTUAL_ENV": "/cache/venv-for${localWorkspaceFolder}", + "PATH": "/cache/venv-for${localWorkspaceFolder}/bin:${containerEnv:PATH}" }, "customizations": { "vscode": { // Set *default* container specific settings.json values on container create. "settings": { - "python.defaultInterpreterPath": "/venv/bin/python" + // Use the container's python by default + "python.defaultInterpreterPath": "/cache/venv-for${localWorkspaceFolder}/bin/python", + // Don't activate the venv as it is already in the PATH + "python.terminal.activateEnvInCurrentTerminal": false, + "python.terminal.activateEnvironment": false, + // Workaround to prevent garbled python REPL in the terminal + // https://github.com/microsoft/vscode-python/issues/25505 + "python.terminal.shellIntegration.enabled": false }, // Add the IDs of extensions you want installed when the container is created. "extensions": [ @@ -27,20 +43,30 @@ ] } }, - "features": { - // add in eternal history and other bash features - "ghcr.io/diamondlightsource/devcontainer-features/bash-config:1.0.0": {} - }, - // Create the config folder for the bash-config feature - "initializeCommand": "mkdir -p ${localEnv:HOME}/.config/bash-config", + // Create the config folder for the bash-config feature and uv cache + "initializeCommand": "mkdir -p ${localEnv:HOME}/.config/terminal-config", "runArgs": [ // Allow the container to access the host X11 display and EPICS CA "--net=host", // Make sure SELinux does not disable with access to host filesystems like tmp "--security-opt=label=disable" ], + "mounts": [ + // Mount in the user terminal config folder so it can be edited + { + "source": "${localEnv:HOME}/.config/terminal-config", + "target": "/user-terminal-config", + "type": "bind" + }, + // Keep a persistent cross container cache for uv, pre-commit, and the venvs + { + "source": "devcontainer-shared-cache", + "target": "/cache", + "type": "volume" + } + ], // Mount the parent as /workspaces so we can pip install peers as editable "workspaceMount": "source=${localWorkspaceFolder}/..,target=/workspaces,type=bind", - // After the container is created, install the python project in editable form - "postCreateCommand": "pip install $([ -f dev-requirements.txt ] && echo '-c dev-requirements.txt') -e '.[dev]' && pre-commit install" + // After the container is created, recreate the venv then make pre-commit first run faster + "postCreateCommand": "uv venv --clear && uv sync && pre-commit install --install-hooks" } diff --git a/.github/CONTRIBUTING.md b/.github/CONTRIBUTING.md index 4cb1820..ce6463c 100644 --- a/.github/CONTRIBUTING.md +++ b/.github/CONTRIBUTING.md @@ -24,4 +24,4 @@ It is recommended that developers use a [vscode devcontainer](https://code.visua This project was created using the [Diamond Light Source Copier Template](https://github.com/DiamondLightSource/python-copier-template) for Python projects. -For more information on common tasks like setting up a developer environment, running the tests, and setting a pre-commit hook, see the template's [How-to guides](https://diamondlightsource.github.io/python-copier-template/2.6.0/how-to.html). +For more information on common tasks like setting up a developer environment, running the tests, and setting a pre-commit hook, see the template's [How-to guides](https://diamondlightsource.github.io/python-copier-template/5.0.2/how-to.html). diff --git a/.github/ISSUE_TEMPLATE/bug_report.md b/.github/ISSUE_TEMPLATE/bug_report.md index aa65892..92087f5 100644 --- a/.github/ISSUE_TEMPLATE/bug_report.md +++ b/.github/ISSUE_TEMPLATE/bug_report.md @@ -7,7 +7,7 @@ assignees: '' --- -Describe the bug, including a clear and concise description of the expected behavior, the actual behavior and the context in which you encountered it (ideally include details of your environment). +Describe the bug, including a clear and concise description of the expected behaviour, the actual behavior and the context in which you encountered it (ideally include details of your environment). ## Steps To Reproduce Steps to reproduce the behavior: diff --git a/.github/actions/install_requirements/action.yml b/.github/actions/install_requirements/action.yml deleted file mode 100644 index d33e080..0000000 --- a/.github/actions/install_requirements/action.yml +++ /dev/null @@ -1,34 +0,0 @@ -name: Install requirements -description: Install a version of python then call pip install and report what was installed -inputs: - python-version: - description: Python version to install, default is from Dockerfile - default: "dev" - pip-install: - description: Parameters to pass to pip install - default: "$([ -f dev-requirements.txt ] && echo '-c dev-requirements.txt') -e .[dev]" - -runs: - using: composite - steps: - - name: Get version of python - run: | - PYTHON_VERSION="${{ inputs.python-version }}" - if [ $PYTHON_VERSION == "dev" ]; then - PYTHON_VERSION=$(sed -n "s/ARG PYTHON_VERSION=//p" Dockerfile) - fi - echo "PYTHON_VERSION=$PYTHON_VERSION" >> "$GITHUB_ENV" - shell: bash - - - name: Setup python - uses: actions/setup-python@v5 - with: - python-version: ${{ env.PYTHON_VERSION }} - - - name: Install packages - run: pip install ${{ inputs.pip-install }} - shell: bash - - - name: Report what was installed - run: pip freeze - shell: bash diff --git a/.github/dependabot.yml b/.github/dependabot.yml deleted file mode 100644 index 184ba36..0000000 --- a/.github/dependabot.yml +++ /dev/null @@ -1,24 +0,0 @@ -# To get started with Dependabot version updates, you'll need to specify which -# package ecosystems to update and where the package manifests are located. -# Please see the documentation for all configuration options: -# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates - -version: 2 -updates: - - package-ecosystem: "github-actions" - directory: "/" - schedule: - interval: "weekly" - groups: - actions: - patterns: - - "*" - - - package-ecosystem: "pip" - directory: "/" - schedule: - interval: "weekly" - groups: - dev-dependencies: - patterns: - - "*" diff --git a/.github/workflows/_check.yml b/.github/workflows/_check.yml deleted file mode 100644 index a6139c1..0000000 --- a/.github/workflows/_check.yml +++ /dev/null @@ -1,27 +0,0 @@ -on: - workflow_call: - outputs: - branch-pr: - description: The PR number if the branch is in one - value: ${{ jobs.pr.outputs.branch-pr }} - -jobs: - pr: - runs-on: "ubuntu-latest" - outputs: - branch-pr: ${{ steps.script.outputs.result }} - steps: - - uses: actions/github-script@v7 - id: script - if: github.event_name == 'push' - with: - script: | - const prs = await github.rest.pulls.list({ - owner: context.repo.owner, - repo: context.repo.repo, - head: context.repo.owner + ':${{ github.ref_name }}' - }) - if (prs.data.length) { - console.log(`::notice ::Skipping CI on branch push as it is already run in PR #${prs.data[0]["number"]}`) - return prs.data[0]["number"] - } diff --git a/.github/workflows/_container.yml b/.github/workflows/_container.yml index da5e493..1d02e99 100644 --- a/.github/workflows/_container.yml +++ b/.github/workflows/_container.yml @@ -1,5 +1,9 @@ on: workflow_call: + inputs: + publish: + type: boolean + description: If true, pushes image to container registry jobs: build: @@ -7,7 +11,7 @@ jobs: steps: - name: Checkout - uses: actions/checkout@v4 + uses: actions/checkout@v5 with: # Need this to get version number from last tag fetch-depth: 0 @@ -47,7 +51,7 @@ jobs: type=raw,value=latest - name: Push cached image to container registry - if: github.ref_type == 'tag' + if: inputs.publish && github.ref_type == 'tag' uses: docker/build-push-action@v6 env: DOCKER_BUILD_RECORD_UPLOAD: false diff --git a/.github/workflows/_dist.yml b/.github/workflows/_dist.yml index b1c4c93..9fdb47f 100644 --- a/.github/workflows/_dist.yml +++ b/.github/workflows/_dist.yml @@ -7,15 +7,18 @@ jobs: steps: - name: Checkout - uses: actions/checkout@v4 + uses: actions/checkout@v5 with: # Need this to get version number from last tag fetch-depth: 0 + - name: Install uv + uses: astral-sh/setup-uv@v7 + - name: Build sdist and wheel run: > export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct) && - pipx run build + uvx --from build pyproject-build - name: Upload sdist and wheel as artifacts uses: actions/upload-artifact@v4 @@ -24,12 +27,10 @@ jobs: path: dist - name: Check for packaging errors - run: pipx run twine check --strict dist/* + run: uvx twine check --strict dist/* - name: Install produced wheel - uses: ./.github/actions/install_requirements - with: - pip-install: dist/*.whl + run: python -m pip install dist/*.whl - name: Test module --version works using the installed wheel # If more than one module in src/ replace with module name to test diff --git a/.github/workflows/_docs.yml b/.github/workflows/_docs.yml index a1cafca..272a30f 100644 --- a/.github/workflows/_docs.yml +++ b/.github/workflows/_docs.yml @@ -1,6 +1,7 @@ on: workflow_call: + jobs: build: runs-on: ubuntu-latest @@ -11,7 +12,7 @@ jobs: run: sleep 60 - name: Checkout - uses: actions/checkout@v4 + uses: actions/checkout@v5 with: # Need this to get version number from last tag fetch-depth: 0 @@ -19,11 +20,11 @@ jobs: - name: Install system packages run: sudo apt-get install graphviz - - name: Install python packages - uses: ./.github/actions/install_requirements + - name: Install uv + uses: astral-sh/setup-uv@v7 - name: Build docs - run: tox -e docs + run: uv run --locked tox -e docs - name: Remove environment.pickle run: rm build/html/.doctrees/environment.pickle diff --git a/.github/workflows/_pypi.yml b/.github/workflows/_pypi.yml index 8032bba..fa78b9e 100644 --- a/.github/workflows/_pypi.yml +++ b/.github/workflows/_pypi.yml @@ -8,7 +8,7 @@ jobs: steps: - name: Download dist artifact - uses: actions/download-artifact@v4 + uses: actions/download-artifact@v5 with: name: dist path: dist diff --git a/.github/workflows/_release.yml b/.github/workflows/_release.yml index 81b6264..15171d4 100644 --- a/.github/workflows/_release.yml +++ b/.github/workflows/_release.yml @@ -7,7 +7,7 @@ jobs: steps: - name: Download artifacts - uses: actions/download-artifact@v4 + uses: actions/download-artifact@v5 with: merge-multiple: true @@ -23,7 +23,7 @@ jobs: - name: Create GitHub Release # We pin to the SHA, not the tag, for security reasons. # https://docs.github.com/en/actions/learn-github-actions/security-hardening-for-github-actions#using-third-party-actions - uses: softprops/action-gh-release@e7a8f85e1c67a31e6ed99a94b41bd0b71bbee6b8 # v2.0.9 + uses: softprops/action-gh-release@6da8fa9354ddfdc4aeace5fc48d7f679b5214090 # v2.4.1 with: prerelease: ${{ contains(github.ref_name, 'a') || contains(github.ref_name, 'b') || contains(github.ref_name, 'rc') }} files: "*" diff --git a/.github/workflows/_test.yml b/.github/workflows/_test.yml index f652d41..46cd49d 100644 --- a/.github/workflows/_test.yml +++ b/.github/workflows/_test.yml @@ -3,19 +3,17 @@ on: inputs: python-version: type: string - description: The version of python to install - required: true + description: The version of python to install, default is from .python-version file + default: "" runs-on: type: string description: The runner to run this job on required: true - secrets: - CODECOV_TOKEN: - required: true env: # https://github.com/pytest-dev/pytest/issues/2042 PY_IGNORE_IMPORTMISMATCH: "1" + UV_PYTHON: ${{ inputs.python-version }} jobs: run: @@ -23,40 +21,19 @@ jobs: steps: - name: Checkout - uses: actions/checkout@v4 + uses: actions/checkout@v5 with: # Need this to get version number from last tag fetch-depth: 0 - - if: inputs.python-version == 'dev' - name: Install dev versions of python packages - uses: ./.github/actions/install_requirements - - - if: inputs.python-version == 'dev' - name: Write the requirements as an artifact - run: pip freeze --exclude-editable > /tmp/dev-requirements.txt - - - if: inputs.python-version == 'dev' - name: Upload dev-requirements.txt - uses: actions/upload-artifact@v4 - with: - name: dev-requirements - path: /tmp/dev-requirements.txt - - - if: inputs.python-version != 'dev' - name: Install latest versions of python packages - uses: ./.github/actions/install_requirements - with: - python-version: ${{ inputs.python-version }} - pip-install: ".[dev]" + - name: Install uv + uses: astral-sh/setup-uv@v7 - name: Run tests - run: tox -e tests + run: uv run --locked tox -e tests - name: Upload coverage to Codecov - uses: codecov/codecov-action@v4 + uses: codecov/codecov-action@v5 with: name: ${{ inputs.python-version }}/${{ inputs.runs-on }} files: cov.xml - env: - CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} diff --git a/.github/workflows/_tox.yml b/.github/workflows/_tox.yml index a13536d..56eddd4 100644 --- a/.github/workflows/_tox.yml +++ b/.github/workflows/_tox.yml @@ -13,10 +13,10 @@ jobs: steps: - name: Checkout - uses: actions/checkout@v4 + uses: actions/checkout@v5 - - name: Install python packages - uses: ./.github/actions/install_requirements + - name: Install uv + uses: astral-sh/setup-uv@v7 - name: Run tox - run: tox -e ${{ inputs.tox }} + run: uv run --locked tox -e ${{ inputs.tox }} diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 9be1759..2de5c37 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -2,66 +2,57 @@ name: CI on: push: + branches: + - main + tags: + - "*" pull_request: jobs: - check: - uses: ./.github/workflows/_check.yml - lint: - needs: check - if: needs.check.outputs.branch-pr == '' uses: ./.github/workflows/_tox.yml with: tox: pre-commit,type-checking test: - needs: check - if: needs.check.outputs.branch-pr == '' strategy: matrix: runs-on: ["ubuntu-latest"] # can add windows-latest, macos-latest - python-version: ["3.11", "3.12"] - include: - # Include one that runs in the dev environment - - runs-on: "ubuntu-latest" - python-version: "dev" + python-version: ["3.11", "3.12", "3.13"] fail-fast: false uses: ./.github/workflows/_test.yml with: runs-on: ${{ matrix.runs-on }} python-version: ${{ matrix.python-version }} - secrets: - CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} container: - needs: check - if: needs.check.outputs.branch-pr == '' + needs: test + if: always() uses: ./.github/workflows/_container.yml + with: + publish: ${{ needs.test.result == 'success' }} permissions: contents: read packages: write docs: - needs: check - if: needs.check.outputs.branch-pr == '' uses: ./.github/workflows/_docs.yml + permissions: + contents: write dist: - needs: check - if: needs.check.outputs.branch-pr == '' uses: ./.github/workflows/_dist.yml - + pypi: + needs: [dist, test] if: github.ref_type == 'tag' - needs: dist uses: ./.github/workflows/_pypi.yml permissions: id-token: write - + release: + needs: [dist, test, docs] if: github.ref_type == 'tag' - needs: [dist, docs] uses: ./.github/workflows/_release.yml permissions: contents: write diff --git a/.github/workflows/periodic.yml b/.github/workflows/periodic.yml index e2a0fd1..18b419c 100644 --- a/.github/workflows/periodic.yml +++ b/.github/workflows/periodic.yml @@ -10,4 +10,4 @@ jobs: linkcheck: uses: ./.github/workflows/_tox.yml with: - tox: docs build -- -b linkcheck + tox: docs -- -b linkcheck diff --git a/.gitleaks.toml b/.gitleaks.toml new file mode 100644 index 0000000..9ecf124 --- /dev/null +++ b/.gitleaks.toml @@ -0,0 +1,19 @@ +# This allow-list is limited to YAML/YML files to cut down SealedSecrets false positives. +# All gitleaks default rules still apply everywhere (useDefault = true). +# To broaden this allow-list to all files, comment out the 'paths' line below. + +[extend] +useDefault = true + +[[rules]] +id = "generic-api-key" + +# Pattern-only allowlist for long Ag… tokens in YAML +[[rules.allowlists]] +condition = "AND" +regexes = [ + # Boundary-safe Ag… token without lookarounds (RE2-safe) + '''(?:^|[^A-Za-z0-9+/=])(Ag[A-Za-z0-9+/]{500,}={0,2})(?:[^A-Za-z0-9+/=]|$)''' +] +# Limit to YAML only for now. Comment this out if you want it to apply everywhere. +paths = ['''(?i).*\.ya?ml$'''] diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 60fc23f..a43ed57 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,8 +1,9 @@ repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.5.0 + rev: v5.0.0 hooks: - id: check-added-large-files + exclude: ^uv.lock - id: check-yaml - id: check-merge-conflict - id: end-of-file-fixer @@ -12,7 +13,7 @@ repos: - id: ruff name: lint with ruff language: system - entry: ruff check --force-exclude + entry: ruff check --force-exclude --fix types: [python] require_serial: true @@ -22,3 +23,15 @@ repos: entry: ruff format --force-exclude types: [python] require_serial: true + + - id: uv-sync + name: update uv.lock and venv + pass_filenames: false + language: system + entry: uv sync + files: ^(uv\.lock|pyproject\.toml)$ + + - repo: https://github.com/gitleaks/gitleaks + rev: v8.28.0 + hooks: + - id: gitleaks diff --git a/.python-version b/.python-version new file mode 100644 index 0000000..2c07333 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.11 diff --git a/Dockerfile b/Dockerfile index e08eb14..8334f7c 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,28 +1,43 @@ # The devcontainer should use the developer target and run as root with podman # or docker with user namespaces. -ARG PYTHON_VERSION=3.11 -FROM python:${PYTHON_VERSION} AS developer +FROM ghcr.io/diamondlightsource/ubuntu-devcontainer:noble AS developer # Add any system dependencies for the developer/build environment here -RUN apt-get update && apt-get install -y --no-install-recommends \ +RUN apt-get update -y && apt-get install -y --no-install-recommends \ graphviz \ - && rm -rf /var/lib/apt/lists/* - -# Set up a virtual environment and put it in PATH -RUN python -m venv /venv -ENV PATH=/venv/bin:$PATH + && apt-get dist-clean # The build stage installs the context into the venv FROM developer AS build -COPY . /context -WORKDIR /context -RUN touch dev-requirements.txt && pip install -c dev-requirements.txt . -# The runtime stage copies the built venv into a slim runtime container -FROM python:${PYTHON_VERSION}-slim AS runtime +# Change the working directory to the `app` directory +# and copy in the project +WORKDIR /app +COPY . /app +RUN chmod o+wrX . + +# Tell uv sync to install python in a known location so we can copy it out later +ENV UV_PYTHON_INSTALL_DIR=/python + +# Sync the project without its dev dependencies +RUN --mount=type=cache,target=/root/.cache/uv \ + uv sync --locked --no-editable --no-dev + + +# The runtime stage copies the built venv into a runtime container +FROM ubuntu:noble AS runtime + # Add apt-get system dependecies for runtime here if needed -COPY --from=build /venv/ /venv/ -ENV PATH=/venv/bin:$PATH +# RUN apt-get update -y && apt-get install -y --no-install-recommends \ +# some-library \ +# && apt-get dist-clean + +# Copy the python installation from the build stage +COPY --from=build /python /python + +# Copy the environment, but not the source code +COPY --from=build /app/.venv /app/.venv +ENV PATH=/app/.venv/bin:$PATH # change this entrypoint if it is not the same as the repo ENTRYPOINT ["fastcs-pandablocks"] diff --git a/docs/conf.py b/docs/conf.py index dfb2cc2..3d13854 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -113,7 +113,7 @@ # docs in the python documentation. intersphinx_mapping = { "python": ("https://docs.python.org/3/", None), - "fastcs": ("https://diamondlightsource.github.io/FastCS/main", None), + "fastcs": ("https://diamondlightsource.github.io/fastcs/main", None), } # A dictionary of graphviz graph attributes for inheritance diagrams. diff --git a/pyproject.toml b/pyproject.toml index 95d3d53..735f2a0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -5,42 +5,43 @@ build-backend = "setuptools.build_meta" [project] name = "fastcs-pandablocks" classifiers = [ - "Development Status :: 3 - Alpha", - "License :: OSI Approved :: Apache Software License", - "Programming Language :: Python :: 3.11", - "Programming Language :: Python :: 3.12", + "Development Status :: 3 - Alpha", + "License :: OSI Approved :: Apache Software License", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3.13", ] description = "A softioc to control a PandABlocks-FPGA." dependencies = [ - "fastcs[epicspva]~=0.11.1", - "pandablocks~=0.10.0", - "numpy<2", # until https://github.com/mdavidsaver/p4p/issues/145 is fixed - "pydantic>2", - "h5py", + "fastcs[epicspva]~=0.11.1", + "pandablocks~=0.10.0", + "numpy<2", # until https://github.com/mdavidsaver/p4p/issues/145 is fixed + "pydantic>2", + "h5py", ] dynamic = ["version"] license.file = "LICENSE" readme = "README.md" requires-python = ">=3.11" -[project.optional-dependencies] +[dependency-groups] dev = [ - "copier", - "myst-parser", - "pipdeptree", - "pre-commit", - "pydata-sphinx-theme>=0.12", - "pyright", - "pytest", - "pytest-asyncio", - "pytest-cov", - "pytest-mock", - "ruff", - "sphinx-autobuild", - "sphinx-copybutton", - "sphinx-design", - "tox-direct", - "types-mock", + "copier", + "myst-parser", + "pipdeptree", + "pre-commit", + "pydata-sphinx-theme>=0.12", + "pyright", + "pytest", + "pytest-asyncio", + "pytest-cov", + "pytest-mock", + "ruff", + "sphinx-autobuild", + "sphinx-copybutton", + "sphinx-design", + "tox-uv", + "types-mock", ] [project.scripts] @@ -53,7 +54,6 @@ GitHub = "https://github.com/PandABlocks/fastcs-PandABlocks" email = "eva.lott@diamond.ac.uk" name = "Eva Lott" - [tool.setuptools_scm] version_file = "src/fastcs_pandablocks/_version.py" @@ -72,50 +72,111 @@ filterwarnings = "error" testpaths = "docs src tests" [tool.coverage.run] +patch = ["subprocess"] data_file = "/tmp/fastcs_pandablocks.coverage" [tool.coverage.paths] # Tests are run from installed location, map back to the src directory source = ["src", "**/site-packages/"] -# tox must currently be configured via an embedded ini string -# See: https://github.com/tox-dev/tox/issues/999 [tool.tox] -legacy_tox_ini = """ -[tox] -skipsdist=True - -[testenv:{pre-commit,type-checking,tests,docs}] -# Don't create a virtualenv for the command, requires tox-direct plugin -direct = True -passenv = * -allowlist_externals = - pytest - pre-commit - pyright - sphinx-build - sphinx-autobuild -commands = - pre-commit: pre-commit run --all-files --show-diff-on-failure {posargs} - type-checking: pyright src tests {posargs} - tests: pytest --cov=fastcs_pandablocks --cov-report term --cov-report xml:cov.xml {posargs} - docs: sphinx-{posargs:build -EW --keep-going} -T docs build/html -""" +skipsdist = true +# envs to runs automatically with tox -p +env_list = ["pre-commit", "type-checking", "tests", "docs"] + +[tool.tox.env_run_base] +# Pass all environment variables to the test environments +passenv = ["*"] + +[tool.tox.env.pre-commit] +description = "Run pre-commit on all files" +commands = [ + [ + "pre-commit", + "run", + "--all-files", + "--show-diff-on-failure", + { replace = "posargs", default = [ + ], extend = true }, + ], +] + +[tool.tox.env.type-checking] +description = "Run pyright" +commands = [ + [ + "pyright", + "--pythonpath", + "{env:VIRTUAL_ENV}/bin/python", + "src", + "tests", + { replace = "posargs", default = [ + ], extend = true }, + ], +] + +[tool.tox.env.tests] +description = "Run tests with coverage" +commands = [ + [ + "pytest", + "--cov=fastcs_pandablocks", + "--cov-report", + "term", + "--cov-report", + "xml:cov.xml", + { replace = "posargs", default = [ + ], extend = true }, + ], +] + +[tool.tox.env.docs] +description = "Run docs build with clean environment" +commands = [ + [ + "sphinx-build", + "--fresh-env", + "--show-traceback", + "--fail-on-warning", + "--keep-going", + "docs", + "build/html", + { replace = "posargs", default = [ + ], extend = true }, + ], +] + +[tool.tox.env.docs-autobuild] +description = "Run docs with autobuild on change" +commands = [ + [ + "sphinx-autobuild", + "--show-traceback", + "--watch", + "README.md", + "docs", + "build/html", + { replace = "posargs", default = [ + ], extend = true }, + ], +] [tool.ruff] -src = ["src", "tests"] -line-length = 88 lint.select = [ - "B", # flake8-bugbear - https://docs.astral.sh/ruff/rules/#flake8-bugbear-b - "C4", # flake8-comprehensions - https://docs.astral.sh/ruff/rules/#flake8-comprehensions-c4 - "E", # pycodestyle errors - https://docs.astral.sh/ruff/rules/#error-e - "F", # pyflakes rules - https://docs.astral.sh/ruff/rules/#pyflakes-f - "W", # pycodestyle warnings - https://docs.astral.sh/ruff/rules/#warning-w - "I", # isort - https://docs.astral.sh/ruff/rules/#isort-i - "UP", # pyupgrade - https://docs.astral.sh/ruff/rules/#pyupgrade-up - "SLF", # self - https://docs.astral.sh/ruff/settings/#lintflake8-self + "B", # flake8-bugbear - https://docs.astral.sh/ruff/rules/#flake8-bugbear-b + "C4", # flake8-comprehensions - https://docs.astral.sh/ruff/rules/#flake8-comprehensions-c4 + "E", # pycodestyle errors - https://docs.astral.sh/ruff/rules/#error-e + "F", # pyflakes rules - https://docs.astral.sh/ruff/rules/#pyflakes-f + "N", # pep8-naming - https://docs.astral.sh/ruff/rules/#pep8-naming-n + "W", # pycodestyle warnings - https://docs.astral.sh/ruff/rules/#warning-w + "I", # isort - https://docs.astral.sh/ruff/rules/#isort-i + "UP", # pyupgrade - https://docs.astral.sh/ruff/rules/#pyupgrade-up + "SLF", # self - https://docs.astral.sh/ruff/settings/#lintflake8-self ] +src = ["src", "tests"] +line-length = 88 + [tool.ruff.lint.per-file-ignores] # By default, private member access is allowed in tests # See https://github.com/DiamondLightSource/python-copier-template/issues/154 diff --git a/renovate.json b/renovate.json new file mode 100644 index 0000000..7a40c6a --- /dev/null +++ b/renovate.json @@ -0,0 +1,41 @@ +{ + "$schema": "https://docs.renovatebot.com/renovate-schema.json", + "extends": [ + "config:recommended" + ], + "lockFileMaintenance": { + "description": "Keep uv.lock up to date, merging if tests pass", + "enabled": true, + "automerge": true + }, + "packageRules": [ + { + "description": "Disable python version as that is managed by python-copier-template", + "matchManagers": [ + "pyenv" + ], + "enabled": false + }, + { + "description": "Disable github actions that are managed by python-copier-template", + "matchPackageNames": [ + "actions/checkout", + "astral-sh/setup-uv", + "actions/upload-artifact", + "actions/download-artifact", + "softprops/action-gh-release", + "codecov/codecov-action", + "docker/setup-buildx-action", + "docker/login-action", + "docker/build-push-action", + "docker/metadata-action", + "pypa/gh-action-pypi-publish", + "peaceiris/actions-gh-pages" + ], + "matchManagers": [ + "github-actions" + ], + "enabled": false + } + ] +} diff --git a/src/fastcs_pandablocks/__main__.py b/src/fastcs_pandablocks/__main__.py index 96c435c..3486152 100644 --- a/src/fastcs_pandablocks/__main__.py +++ b/src/fastcs_pandablocks/__main__.py @@ -6,4 +6,5 @@ from ._version import __version__ -launch(PandaController, version=__version__) +if __name__ == "__main__": + launch(PandaController, version=__version__) diff --git a/src/fastcs_pandablocks/panda/blocks/data.py b/src/fastcs_pandablocks/panda/blocks/data.py index 67a2e2f..5ae370f 100644 --- a/src/fastcs_pandablocks/panda/blocks/data.py +++ b/src/fastcs_pandablocks/panda/blocks/data.py @@ -124,7 +124,7 @@ def start_pipeline(self): self.number_captured_setter_pipeline, ) - def _handle_StartData(self, data: StartData): + def _handle_start_data(self, data: StartData): if self.start_data and data != self.start_data: # PandA was disarmed, had config changed, and rearmed. # Cannot process to the same file with different start data. @@ -255,7 +255,7 @@ async def _capture_last_n(self, data: FrameData): await self.number_received_setter(self.number_of_received_rows) - def _handle_EndData(self, data: EndData): + def _handle_end_data(self, data: EndData): match self.capture_mode: case CaptureMode.LAST_N: # In LAST_N only write FrameData if the EndReason is OK @@ -298,11 +298,11 @@ async def handle_data(self, data: HDFReceived): pass case StartData(): await self.status_message_setter("Starting capture") - self._handle_StartData(data) + self._handle_start_data(data) case FrameData(): await self._handle_FrameData(data) case EndData(): - self._handle_EndData(data) + self._handle_end_data(data) case _: raise RuntimeError( f"Data was recieved that was of type {type(data)}, not" diff --git a/tests/conftest.py b/tests/conftest.py index ebe9c10..e69de29 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,21 +0,0 @@ -import os -from typing import Any - -import pytest - -# Prevent pytest from catching exceptions when debugging in vscode so that break on -# exception works correctly (see: https://github.com/pytest-dev/pytest/issues/7409) -if os.getenv("PYTEST_RAISE", "0") == "1": - - @pytest.hookimpl(tryfirst=True) - def 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size = 4867, upload-time = "2024-12-07T15:28:28.314Z" } +wheels = [ + { url = "https://files.pythonhosted.org/packages/e1/07/c6fe3ad3e685340704d314d765b7912993bcb8dc198f0e7a89382d37974b/win32_setctime-1.2.0-py3-none-any.whl", hash = "sha256:95d644c4e708aba81dc3704a116d8cbc974d70b3bdb8be1d150e36be6e9d1390", size = 4083, upload-time = "2024-12-07T15:28:26.465Z" }, +] From 1413dd5b9f8bc0f66c2e4636117a5c782180fc06 Mon Sep 17 00:00:00 2001 From: Hiran Wijesinghe Date: Tue, 14 Apr 2026 11:45:48 +0000 Subject: [PATCH 2/4] fix container build CI --- src/fastcs_pandablocks/__main__.py | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/src/fastcs_pandablocks/__main__.py b/src/fastcs_pandablocks/__main__.py index 3486152..978e931 100644 --- a/src/fastcs_pandablocks/__main__.py +++ b/src/fastcs_pandablocks/__main__.py @@ -6,5 +6,10 @@ from ._version import __version__ -if __name__ == "__main__": + +def main() -> None: launch(PandaController, version=__version__) + + +if __name__ == "__main__": + main() From 60d12de9670d3573d0ba9b1d308f21748a0da2d4 Mon Sep 17 00:00:00 2001 From: Hiran Wijesinghe Date: Tue, 14 Apr 2026 11:57:39 +0000 Subject: [PATCH 3/4] CR: fix typos --- .github/ISSUE_TEMPLATE/bug_report.md | 4 ++-- src/fastcs_pandablocks/panda/blocks/data.py | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/ISSUE_TEMPLATE/bug_report.md b/.github/ISSUE_TEMPLATE/bug_report.md index 92087f5..1bf7a15 100644 --- a/.github/ISSUE_TEMPLATE/bug_report.md +++ b/.github/ISSUE_TEMPLATE/bug_report.md @@ -7,10 +7,10 @@ assignees: '' --- -Describe the bug, including a clear and concise description of the expected behaviour, the actual behavior and the context in which you encountered it (ideally include details of your environment). +Describe the bug, including a clear and concise description of the expected behaviour, the actual behaviour and the context in which you encountered it (ideally include details of your environment). ## Steps To Reproduce -Steps to reproduce the behavior: +Steps to reproduce the behaviour: 1. Go to '...' 2. Click on '....' 3. Scroll down to '....' diff --git a/src/fastcs_pandablocks/panda/blocks/data.py b/src/fastcs_pandablocks/panda/blocks/data.py index 5ae370f..258a746 100644 --- a/src/fastcs_pandablocks/panda/blocks/data.py +++ b/src/fastcs_pandablocks/panda/blocks/data.py @@ -305,7 +305,7 @@ async def handle_data(self, data: HDFReceived): self._handle_end_data(data) case _: raise RuntimeError( - f"Data was recieved that was of type {type(data)}, not" + f"Data was received that was of type {type(data)}, not" "StartData, EndData, ReadyData, or FrameData" ) From bd9db4d777f1733b77fcce50c05f403cc68979a5 Mon Sep 17 00:00:00 2001 From: Hiran Wijesinghe Date: Tue, 14 Apr 2026 11:59:25 +0000 Subject: [PATCH 4/4] CR: fix async bug --- src/fastcs_pandablocks/panda/blocks/data.py | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/src/fastcs_pandablocks/panda/blocks/data.py b/src/fastcs_pandablocks/panda/blocks/data.py index 258a746..39bd536 100644 --- a/src/fastcs_pandablocks/panda/blocks/data.py +++ b/src/fastcs_pandablocks/panda/blocks/data.py @@ -124,7 +124,7 @@ def start_pipeline(self): self.number_captured_setter_pipeline, ) - def _handle_start_data(self, data: StartData): + async def _handle_start_data(self, data: StartData): if self.start_data and data != self.start_data: # PandA was disarmed, had config changed, and rearmed. # Cannot process to the same file with different start data. @@ -133,7 +133,7 @@ def _handle_start_data(self, data: StartData): "data for this file. Aborting HDF5 data capture." ) - self.status_message_setter( + await self.status_message_setter( "Mismatched StartData packet for file", ) self.put_data_to_file( @@ -255,19 +255,19 @@ async def _capture_last_n(self, data: FrameData): await self.number_received_setter(self.number_of_received_rows) - def _handle_end_data(self, data: EndData): + async def _handle_end_data(self, data: EndData): match self.capture_mode: case CaptureMode.LAST_N: # In LAST_N only write FrameData if the EndReason is OK if data.reason not in (EndReason.OK, EndReason.MANUALLY_STOPPED): - self.status_message_setter( + await self.status_message_setter( f"Stopped capturing with reason {data.reason}, " "skipping writing of buffered frames" ) self.finish_capturing = True return - self.status_message_setter( + await self.status_message_setter( "Finishing capture, writing buffered frames to file" ) assert self.start_data is not None @@ -277,7 +277,7 @@ def _handle_end_data(self, data: EndData): case CaptureMode.FOREVER: if data.reason != EndReason.MANUALLY_STOPPED: - self.status_message_setter( + await self.status_message_setter( "Finished capture, waiting for next ReadyData" ) return @@ -288,7 +288,7 @@ def _handle_end_data(self, data: EndData): case _: raise RuntimeError("Unknown capture mode") - self.status_message_setter("Finished capture") + await self.status_message_setter("Finished capture") self.finish_capturing = True self.put_data_to_file(data) @@ -298,11 +298,11 @@ async def handle_data(self, data: HDFReceived): pass case StartData(): await self.status_message_setter("Starting capture") - self._handle_start_data(data) + await self._handle_start_data(data) case FrameData(): await self._handle_FrameData(data) case EndData(): - self._handle_end_data(data) + await self._handle_end_data(data) case _: raise RuntimeError( f"Data was received that was of type {type(data)}, not"