mkdocs.yml

site_name: AP Biology Notes

repo_url: https://github.com/Pagius5/AP_Bio
repo_name: Pagius5/AP Bio

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nav:
  - "Home": index.md
  - "I. Biochemistry":
    - "Unit 01 - Chemistry of Life":
      - "Intro": unit01/chemistry.md
      - "Chemical Basics":
        - "1.1 Structure of Water and Hydrogen Bonding": unit01/1_1.md
        - "1.2 Elements of Life": unit01/1_2.md
      - "Macromolecules":
        - "1.3 Introduction to Macromolecules": unit01/1_3.md
        - "1.4 Carbohydrates": unit01/1_4.md
        - "1.5 Lipids": unit01/1_5.md
        - "1.6 Nucleic Acids": unit01/1_6.md
        - "1.7 Proteins": unit01/1_7.md
  - "II. Cell Biology":
      - "Unit 02 - Cells":
        - "Intro": unit02/cells.md
        - "A Tour of the Cell":
          - "2.1 Cell Structure and Function": unit02/2_1.md
          - "2.2 Cell Size": unit02/2_2.md
        - "Membrane Structure and Function":
          - "2.3 Plasma Membranes": unit02/2_3.md
          - "2.4 Membrane Permeability": unit02/2_4.md
          - "2.5 Membrane Transport": unit02/2_5.md
          - "2.6 Facilitated Diffusion": unit02/2_6.md
          - "2.7 Tonicity and Osmoregulation": unit02/2_7.md
          - "2.8 Mechanisms of Transport": unit02/2_8.md
          - "2.9 Cell Compartmentalization": unit02/2_9.md
          - "2.10 Origins of Cell Compartmentalization": unit02/2_10.md
      - "Unit 03 - Cellular Energetics":
        - "Intro": unit03/energetics.md
        - "An Introduction to Metabolism":
          - "3.1 Enzymes": unit03/3_1.md
          - "3.2 Environmental Impacts on Enzyme Function": unit03/3_2.md
          - "3.3 Cellular Energy": unit03/3_3.md
        - "3.4 Photosynthesis": unit03/3_4.md
        - "3.5 Cellular Respiration": unit03/3_5.md
      - "Unit 04 - Cell Communication and Cell Cycle":
        - "Intro": unit04/communication.md
        - "Cell Communication": 
          - "4.1 Cell Communication": unit04/4_1.md
          - "4.2 Introduction to Signal Transduction": unit04/4_2.md
          - "4.3 Signal Transduction Pathways": unit04/4_3.md
          - "4.4 Feedback": unit04/4_4.md
        - "The Cell Cycle":
          - "4.5 Cell Cycle": unit04/4_5.md
          - "4.6 Regulation of Cell Cycle": unit04/4_6.md
  - "III. Genetics":
    - "Unit 05 - Heredity":
      - "Intro": unit05/heredity.md
      - "Meiosis and Sexual Life Cycles": 
        - "5.1 Meiosis": unit05/5_1.md
        - "5.2 Meiosis and Genetic Diversity": unit05/5_2.md
      - "Mendel and the Gene Idea":
        - "5.3 Mendelian Genetics": unit05/5_3.md
        - "5.4 Non-Mendelian Genetics": unit05/5_4.md
        - "5.5 Environmental Effects on Phenotype": unit05/5_5.md
  - "IV. Molecular Biology":
    - "Unit 06 - Gene Expression and Regulation":
      - "Intro": unit06/gene_expression.md
      - "The Molecular Basis of Inheritance":
        - "6.1 DNA and RNA Structure": unit06/6_1.md
        - "6.2 Replication": unit06/6_2.md
      - "Gene Expression: From Gene to Protein":
        - "6.3 Transcription and RNA Processing": unit06/6_3.md
        - "6.4 Translation": unit06/6_4.md
        - "6.7 Mutations": unit06/6_7.md
      - "Regulation of Gene Expression":
        - "6.5 Regulation of Gene Expression": unit06/6_5.md
        - "6.6 Gene Expression and Cell Specialization": unit06/6_6.md
      - "Biotechnology":
        - "6.8 Biotechnology": unit06/6_8.md
  - "V. Evolutionary Biology":
      - "Unit 07 - Natural Selection": 
        - "Intro": unit07/selection.md
        - "Descent with Modification":
          - "7.1 Introduction to Natural Selection": unit07/7_1.md
          - "7.2 Natural Selection": unit07/7_2.md
          - "7.3 Artificial Selection": unit07/7_3.md
        - "The Evolution of Populations":
          - "7.4 Population Genetics": unit07/7_4.md
          - "7.5 Hardy-Weinberg Equilibrium": unit07/7_5.md
          - "7.12 Variations in Populations": unit07/7_12.md
        - "The Origin of Species":
          - "7.8 Continuing Evolution": unit07/7_8.md
          - "7.10 Speciation": unit07/7_10.md
        - "Phylogeny and the Tree of Life":
          - "7.6 Evidence of Evolution": unit07/7_6.md
          - "7.7 Common Ancestry": unit07/7_7.md
          - "7.9 Phylogeny": unit07/7_9.md
        - "The History of Life on Earth":
          - "7.11 Extinction": unit07/7_11.md
          - "7.13 Origin of Life on Earth": unit07/7_13.md
  - "VI. Ecology":
    - "Unit 08 - Ecology":
      - "Intro": unit08/ecology.md
      - "Organismal Ecology": 
        - "8.1 Responses to the Environment": unit08/8_1.md
      - "Population Ecology":
        - "8.3 Population Ecology": unit08/8_3.md
        - "8.4 Effect of Density of Populations": unit08/8_4.md
      - "Community Ecology":
        - "8.5 Community Ecology": unit08/8_5.md
        - "8.6 Biodiversity": unit08/8_6.md
      - "Ecosystems and Conservation":
        - "8.2 Energy Flow Through Ecosystems": unit08/8_2.md
        - "8.7 Disruptions to Ecosystems": unit08/8_7.md
  - "Labs":
    - "Big Idea 1: Evolution":
      - "Lab 01 - Artificial Selection": labs/lab01_selection.md
      - "Lab 02 - Hardy-Weinberg Modeling": labs/lab02_hw_model.md
      - "Lab 03 - BLAST DNA Analysis": labs/lab03_blast.md
    - "Big Idea 2: Energy & Homeostasis":
      - "Lab 04 - Diffusion & Osmosis": labs/lab04_osmosis.md
      - "Lab 05 - Photosynthesis": labs/lab05_photo.md
      - "Lab 06 - Cellular Respiration": labs/lab06_respiration.md
      - "Lab 10 - Energy Dynamics": labs/lab10_energy.md
      - "Lab 11 - Transpiration": labs/lab11_transpiration.md
    - "Big Idea 3: Information & Heredity":
      - "Lab 07 - Cell Division": labs/lab07_cell_div.md
      - "Lab 08 - Bacterial Transformation": labs/lab08_pGLO.md
      - "Lab 09 - Restriction Enzyme Analysis": labs/lab09_dna_electrophoresis.md
    - "Big Idea 4: Systems Interactions":
      - "Lab 12 - Fruit Fly Behavior": labs/lab12_behavior.md
      - "Lab 13 - Enzyme Activity": labs/lab13_enzymes.md
  - "Misc.":
    - "Statistical Tests (Chi-Square)": resources/stats.md
    - "Formula Sheet Guide": resources/formulas.md