Error in plotAll

[marie2T]

Thanks for providing us this very useful tool.

I am doing an extensive analysis on data from BM samples.

I get an error at plotAll :

Here is my code and error display.

l <- plotAll(matrix,
normFactor,
IdfChromStartEndLength,
gene_position,
"CON_CNVs")

Error: Error in barplot.default(sort(loglik), names = names(sort(loglik)), cex.axis = 0.8, :
'height' must be a vector or a matrix

I tried edditing the plotAll function, however, nothing seems to be working.

Is there any way to work around this error?

Thanks for your help in advance.

[ksinghal28]

Hi @marie2T ,
Were you able to figure out a workaround or reason for this error?

I am encountering it for some of my samples but not all of them. And I cannot figure out a pattern for cases where I do encounter it.

Thank you!

[sonight007]

Hello,

I encounter this same error.
I figured out that I didn't add row.names = 1 when read table:

regions=read.table("chromosome_arm_positions_grch38.txt",sep="\t",row.names = 1,header = T)
head(regions,n=5)
Chrom Start End Length
1p 1 0 122026459 122026459
1q 1 124932724 248956422 124023698
2p 2 0 92188145 92188145
2q 2 94090557 242193529 148102972
3p 3 0 90772458 90772458

After adding it, everything went well.