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CPTAC AML

Description

  • Analysis scripts for the CPTAC AML project described in "A Unified View of Proteogenomic and Metabolomic Complexity in Acute Myeloid Leukemias"
  • Table of contents:
    • fig2: scripts for generating AML-8 subtypes using similarity network fusion (SNF)
    • fig3: scripts for generating ICA
    • fig6: config file of training FunMap. Please visit FunMap code repo to see more detailed instruction of running FunMap
    • fig7: subtype classifier

Raw and processed data access

The raw proteomic, metabolomic, and lipidomic data together with the processed data for the study cohort are available through the Proteomic Data Commons under accession numbers PDC000554, PDC000555, PDC000556, PDC000557, PDC000558, PDC000559, PDC000560, PDC000561 (metabolomics) and PDC000562 (lipidomics).