pm4ngs/pyproject.toml at master · NLM-DIR/pm4ngs · GitHub

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[project]
name = "pm4ngs"
dynamic = ["version"]
description = "PM4NGS generates a standard organizational structure for Next Generation Sequencing (ngs) data analysis"
license = "Public Domain"
authors = [{ name = "Roberto Vera Alvarez", email = "veraalva@ncbi.nlm.nih.gov" }]
maintainers = [{ name = "Roberto Vera Alvarez", email = "veraalva@ncbi.nlm.nih.gov" }]
readme = "README.md"
homepage = "https://github.com/ncbi/pm4ngs"
repository = "https://github.com/ncbi/pm4ngs"
documentation = "https://pm4ngs.readthedocs.io/"
keywords = ["Biocontainers", "Bioinformatics", "NGS", "Genomics"]

classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Science/Research",
    "License :: Public Domain",
    "Natural Language :: English",
    "Operating System :: Unix",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]

requires-python = ">=3.11,<4.0"
dependencies = [
    "bioconda2biocontainer",
    "biopython",
    "cookiecutter",
    "cwltool",
    "docker",
    "GitPython",
    "goenrichment",
    "jupyter",
    "matplotlib",
    "networkx",
    "numpy",
    "pandas",
    "pdf2image",
    "PyYAML",
    "requests",
    "scipy",
    "seaborn",
    "statsmodels",
    "urllib3",
    "xmltodict"
]

[tool.poetry]
packages = [{ include = "pm4ngs", from = "src" }]
version = "0.0.0"

[build-system]
requires = ["poetry-core>=2.0.0,<3.0.0", "poetry-dynamic-versioning>=1.0.0,<2.0.0"]
build-backend = "poetry_dynamic_versioning.backend"


[tool.poetry.scripts]
pm4ngs-server = "pm4ngs.main:start_server_main"
pm4ngs-create = "pm4ngs.main:create_project"
pm4ngs-rnaseq = "pm4ngs.main:rnaseq"
pm4ngs-rnaseq-demo = "pm4ngs.main:rnaseq_demo"
pm4ngs-chipseq = "pm4ngs.main:chipseq"
pm4ngs-chipseq-demo = "pm4ngs.main:chipseq_demo"
pm4ngs-chipexo = "pm4ngs.main:chipexo"
pm4ngs-chipexo-demo = "pm4ngs.main:chipexo_demo"
pm4ngs-transcriptome-annotation = "pm4ngs.main:transcriptome_annotation"
pm4ngs-transcriptome-annotation-demo = "pm4ngs.main:transcriptome_annotation_demo"

[tool.poetry.group.dev.dependencies]
pytest = "*"
pytest-cov = "*"
flake8 = "*"

[tool.poetry.urls]
Tracker = "https://github.com/ncbi/pm4ngs/issues"

[tool.poetry-dynamic-versioning]
enable = true
vcs = "git"
style = "semver"