Assay analytes.txt creation:
- i) and ii) two equally valued steps
i) create assay pISA layer and fill corresponding metadata
note1: assay has ID as user defined, prefix A as developer defined and suffix -type as user defined
note2: assay directory name is defined from assay prefix, assay ID and assay sufix
note3: phenodata is at Investigation level
ii) mark in the phenodata file which samples are going to be anaylsed in which assay (i.e. preferably prior to assay layer generation, but it can be also conducted post assay layer creation by column addition). column names should correspond to the assay ID-suffix
iii) additional script run to generate Analytes.txt according to the phenodata column ID--assay ID-suffix cross-link
additional options to considerate
fetch:
assay prefix + assay ID + assay suffix
assay ID + assay suffix
assay ID
Assay analytes.txt creation:
i) create assay pISA layer and fill corresponding metadata
note1: assay has ID as user defined, prefix A as developer defined and suffix -type as user defined
note2: assay directory name is defined from assay prefix, assay ID and assay sufix
note3: phenodata is at Investigation level
ii) mark in the phenodata file which samples are going to be anaylsed in which assay (i.e. preferably prior to assay layer generation, but it can be also conducted post assay layer creation by column addition). column names should correspond to the assay ID-suffix
iii) additional script run to generate Analytes.txt according to the phenodata column ID--assay ID-suffix cross-link
additional options to considerate
fetch:
assay prefix + assay ID + assay suffix
assay ID + assay suffix
assay ID