diff --git a/notebooks/challenge/bgc/bgc.ipynb b/notebooks/challenge/bgc/bgc.ipynb index 6e85a9dda..a1405c046 100644 --- a/notebooks/challenge/bgc/bgc.ipynb +++ b/notebooks/challenge/bgc/bgc.ipynb @@ -16,6 +16,14 @@ "## Biogeochemistry in CESM" ] }, + { + "cell_type": "markdown", + "id": "ec18022c-4ae1-404a-8688-f7b265310bfa", + "metadata": {}, + "source": [ + "### Caveat: Support for coupled biogeochemistry in CESM3 is still under development. So this content describes biogeochemical features in the context of CESM2. For example, resolutions that are referenced are resolutions used in CESM2." + ] + }, { "cell_type": "markdown", "id": "34516fd8-ed12-44c0-ba57-b684c1c279cf", @@ -205,7 +213,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.9.12" + "version": "3.10.13" } }, "nbformat": 4, diff --git a/notebooks/challenge/bgc/bgc_exercise_1.ipynb b/notebooks/challenge/bgc/bgc_exercise_1.ipynb index e3e910b22..af9310523 100644 --- a/notebooks/challenge/bgc/bgc_exercise_1.ipynb +++ b/notebooks/challenge/bgc/bgc_exercise_1.ipynb @@ -5,7 +5,49 @@ "id": "f406f992-92bd-4b17-9bd3-b99c5c8abaf3", "metadata": {}, "source": [ - "# 1: Set up a BGC case" + "### Caveat: Support for coupled biogeochemistry in CESM3 is still under development. So this content describes biogeochemical features in the context of CESM2. For example, experiments use CESM2 resolutions." + ] + }, + { + "cell_type": "markdown", + "id": "11d78f47-b7dc-4bc7-af9e-284b010ef2ff", + "metadata": {}, + "source": [ + "# 1: Check out a sandbox of the most recent version of CESM2.1" + ] + }, + { + "cell_type": "markdown", + "id": "465ba5c4-1a38-4931-ac27-0c1d76627a8b", + "metadata": {}, + "source": [ + "## Run the following commands in the parent directory of where you have checked out versions of CESM3.\n", + "\n", + "## Note that CESM2 manages versions of components of CESM with a tool called `manage_externals`, not `git-fleximod`, so the commands below differ from what you've used in CESM3." + ] + }, + { + "cell_type": "markdown", + "id": "d71a0ef3-316d-4fc9-9989-b0118c0a3936", + "metadata": { + "jp-MarkdownHeadingCollapsed": true + }, + "source": [ + "```\n", + "cd /glade/u/home/$USER/code\n", + "git clone https://github.com/ESCOMP/CESM.git cesm2.1.5\n", + "cd /glade/u/home/$USER/code/cesm2.1.5\n", + "git checkout cesm2.1.5\n", + "./manage_externals/checkout_externals\n", + "```" + ] + }, + { + "cell_type": "markdown", + "id": "f0a07ccc-fdee-4bf8-870f-a559401c63c6", + "metadata": {}, + "source": [ + "# 2: Set up a BGC case" ] }, { @@ -24,9 +66,20 @@ "