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Revise README with project progress and steps
Added progress on Magnification extraction filter and DSeg image output methods.
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  • PW44_2026_GranCanaria/Projects/PathologyExtensionForMhubIoModules

PW44_2026_GranCanaria/Projects/PathologyExtensionForMhubIoModules/README.md

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@@ -45,20 +45,21 @@ Pathology (DICOM) images differ greatly from radiology images, e.g., contain mul
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1. Create a new pathology extension repository
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2. Implement an extractor module
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3. Implement a specific dicomseg conversion module (e.g., based on highdicom)
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4. Implement the RMS model as PoC
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4. Implement a specific dicomseg conversion module (e.g., based on highdicom)
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5. Implement the RMS model as PoC
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## Progress and Next Steps
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<!-- Update this section as you make progress, describing of what you have ACTUALLY DONE.
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If there are specific steps that you could not complete then you can describe them here, too. -->
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1. Describe specific steps you **have actually done**.
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1. A **PathologyExtension** repository was created. Modules defined in the extension are automatically discovered during the MHubIO run setup so these
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extensions are available to all MHub models
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2. A **PathologyResolutionFilter** module has been developed and tested on DICOM-WSI images from the NCI Imaging Data Commons. The module reads image metadata
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and copies only image resolutions that match an input parameter of desired resolutions. Only image resolutions matching the desired target resolution
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are copied from the input for MHub pipeline processing.
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3. A prototype method using the **HighDicom** Python library was developed and tested to write DICOM DSeg (segmentation) images. Next, this code needs to be
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wrapped as an MHub DSegWriter method and added to the PathologyExtension repository. Once this is complete, pathology algorithns that don't know how to read and write WSI-DICOM can be used in DICOM to DICOM
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workflows
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# Illustrations

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