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| 1 | +--- |
| 2 | +layout: pw44-project |
| 3 | + |
| 4 | +permalink: /:path/ |
| 5 | + |
| 6 | +project_title: Validation of Radiomics.jl library by using ovarian cancer images and possible integration |
| 7 | + in Slicer |
| 8 | +category: Quantification and Computation |
| 9 | +presenter_location: |
| 10 | + |
| 11 | +key_investigators: |
| 12 | + |
| 13 | +- name: Paolo Zaffino |
| 14 | + affiliation: Magna Graecia University of Catanzaro |
| 15 | + country: Italy |
| 16 | + |
| 17 | +- name: Ciro Benito Raggio |
| 18 | + affiliation: Karlsruhe Institute of Technology |
| 19 | + country: Germany |
| 20 | + |
| 21 | +- name: Francesca Spadeda |
| 22 | + affiliation: Karlsruhe Institute of Technology |
| 23 | + country: Germany |
| 24 | + |
| 25 | +--- |
| 26 | + |
| 27 | +# Project Description |
| 28 | + |
| 29 | +<!-- Add a short paragraph describing the project. --> |
| 30 | + |
| 31 | + |
| 32 | +[Radiomics.jl](https://github.com/pzaffino/Radiomics.jl) is a pure Julia library for radiomics feature extraction. |
| 33 | +Being a pretty new library, we want to test and validate it by using CT of ovarian cancer patients. |
| 34 | + |
| 35 | +We would also like to investigate the possibility of calling it from the embedded Python in Slicer. |
| 36 | + |
| 37 | +Of course any suggestion is more than welcome. |
| 38 | + |
| 39 | + |
| 40 | + |
| 41 | + |
| 42 | +## Objective |
| 43 | + |
| 44 | +<!-- Describe here WHAT you would like to achieve (what you will have as end result). --> |
| 45 | + |
| 46 | + |
| 47 | +1. Test Radiomics.jl on ovarian cancer CT |
| 48 | +2. Investigate the possibility of calling Radiomics.jl main function in Python |
| 49 | + |
| 50 | + |
| 51 | + |
| 52 | + |
| 53 | +## Approach and Plan |
| 54 | + |
| 55 | +<!-- Describe here HOW you would like to achieve the objectives stated above. --> |
| 56 | + |
| 57 | + |
| 58 | +1. Compare Radiomics.jl features with those computed by PyRadiomics (considered as the gold standard) |
| 59 | +2. Create a shared library and call it from Python |
| 60 | +3. Collect comments/suggestions |
| 61 | + |
| 62 | + |
| 63 | + |
| 64 | +## Progress and Next Steps |
| 65 | + |
| 66 | +<!-- Update this section as you make progress, describing of what you have ACTUALLY DONE. |
| 67 | + If there are specific steps that you could not complete then you can describe them here, too. --> |
| 68 | + |
| 69 | + |
| 70 | +1. Describe specific steps you **have actually done**. |
| 71 | + |
| 72 | + |
| 73 | + |
| 74 | + |
| 75 | +# Illustrations |
| 76 | + |
| 77 | +<!-- Add pictures and links to videos that demonstrate what has been accomplished. --> |
| 78 | + |
| 79 | + |
| 80 | + |
| 81 | + |
| 82 | +<img width="1106" height="408" alt="Image" src="https://github.com/user-attachments/assets/1dc97ca0-90a1-4e5f-ae40-67730e3dae16" /> |
| 83 | + |
| 84 | + |
| 85 | + |
| 86 | +# Background and References |
| 87 | + |
| 88 | +<!-- If you developed any software, include link to the source code repository. |
| 89 | + If possible, also add links to sample data, and to any relevant publications. --> |
| 90 | + |
| 91 | + |
| 92 | +- Radiomics.jl official page: https://www.radiomicsjl.org |
| 93 | +- Radiomics.jl source code: https://github.com/pzaffino/Radiomics.jl |
| 94 | +- Pyradiomics documentation: https://pyradiomics.readthedocs.io |
| 95 | +- Pyradiomics source code: https://github.com/AIM-Harvard/pyradiomics/tree/master |
| 96 | + |
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