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PW44_2026_GranCanaria/Projects/DeformviewQuantitativeVisualizationOfNonLinearDeformationFieldsForUseInImageGuidedNeurosurgery/README.md

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**Displacement Magnitude Map**
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Voxel-wise magnitude of non-linear deformation between preoperative T2-FLAIR MRI and intraoperative tumour resection T2-FLAIR, from Case 50 of the ReMIND dataset. Warmer colours indicate larger tissue displacement.
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<img src="https://github.com/user-attachments/assets/72cd8330-0b6c-4e1b-bed4-29fcaef86351" width="500" alt="Displacement magnitude map" />
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<img src="https://github.com/user-attachments/assets/72cd8330-0b6c-4e1b-bed4-29fcaef86351" width="800" alt="Displacement magnitude map" />
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**Overlay of Displacement Magnitude (Colour Map) & Current 3D Slicer Transform Visualizer Module (Glyphs)
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The current Transform Visualizer module (core 3D Slicer module) visualizes deformation as glyphs (arrows), grid, and contour. When integrated together, it is more intuitive where deformation has occurred (DeformView) and the direction of deformation (Transform Visualizer).
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<img width="500" alt="NAMIC-Overlay" src="https://github.com/user-attachments/assets/7f059022-35c2-41d7-ae36-b223d832a4a6" />
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<img width="800" alt="NAMIC-Overlay" src="https://github.com/user-attachments/assets/7f059022-35c2-41d7-ae36-b223d832a4a6" />
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**Jacobian determinant magnitude map**
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Visual of the Jacobian map, where red indicates tissue expansion and blue is tissue compression, as a percentage. This is the same data as the above displacement magnitude example.
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<img width="500" height="500" alt="Image" src="https://github.com/user-attachments/assets/85204f95-f9d9-46bf-b656-2ed5951b3d25" />
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<img width="800" alt="Image" src="https://github.com/user-attachments/assets/85204f95-f9d9-46bf-b656-2ed5951b3d25" />
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