Skip to content

Commit 03900d2

Browse files
Update README.md
1 parent c1c1afe commit 03900d2

1 file changed

Lines changed: 9 additions & 1 deletion

File tree

  • PW45_2026_Boston/Projects/Vox2SeglamProtocolGuidedSubcorticalSegmentationIn3DSlicer

PW45_2026_Boston/Projects/Vox2SeglamProtocolGuidedSubcorticalSegmentationIn3DSlicer/README.md

Lines changed: 9 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -85,7 +85,7 @@ key_investigators:
8585
- **Figure 2.** Per-region Dice coefficients (26 structures), mean Dice = 0.908.
8686
<img width="1211" height="329" alt="Image" src="https://github.com/user-attachments/assets/29ddd03b-05c2-42de-9830-0f0201ebf5d1" />
8787

88-
- **Figure 3.** Per-landmark mean localization error (mm): strict ("Classic", 1.1 mm) vs. anatomically-tolerant evaluation (1.4 mm).
88+
- **Figure 3.** Per-landmark mean localization error (mm): strict ("Classic", 1.4 mm) vs. anatomically-tolerant evaluation (1.1 mm).
8989
<img width="1212" height="330" alt="Image" src="https://github.com/user-attachments/assets/94fb3db5-c38d-47d7-be8b-79b114278796" />
9090

9191
- **Figure 4.** Visual example on in-domain test data:
@@ -97,6 +97,14 @@ key_investigators:
9797

9898
# Results
9999

100+
During this Project Week, we achieved the following:
101+
102+
- **Remote hub deployment:** The Vox2SegLAM pipeline was successfully deployed into a remote hub-based infrastructure, enabling users to run inference online without any local installation. The system is functional, and optimization of processing time is ongoing. Special thanks to Martin Bellehumeur for his collaboration on this part.
103+
104+
- **Expert feedback and model evaluation:** We had the opportunity to receive feedback from Professor Jarrett Rushmore on the automatic predictions generated by the pipeline. This allowed us to identify the current limitations of the model, which will be extremely valuable for future refinements.
105+
106+
- **3D Slicer extension:** We developed a 3D Slicer extension that allows users to run the Vox2SegLAM pipeline directly and obtain both subcortical segmentations and anatomical landmark predictions. Experts can then interactively refine the results to produce segmentations that respect neuroanatomical protocols and anatomical constraints. The framework is designed to be flexible and support different protocols, with the current implementation configured by default for the Harvard-Oxford Atlas protocol.
107+
-
100108
- **Video.** Full workflow demo — hub-based remote inference deployment (VolView/CastInterface) followed by the Vox2SegLAM pipeline end-to-end:
101109

102110
<video

0 commit comments

Comments
 (0)