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FASTQ anaysis to inform alignment #51

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FASTQ anaysis to inform alignment#51
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FutureIssues for the futureNew Pipeline

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@markmcdowall
markmcdowall
opened on Oct 30, 2018

With including FASTQC as a pipeline, it would be useful to have an automated way to identify the ideal input parameters for Bowtie2 and BWA (aln or mem) based on the results.

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