Hi,
I saw on the documentation that it was possible to do the segmentation on 3D/4D stacks. My understanding is that ticking the process as 3D box and putting a threshold value would trigger the algorithm to detect 4D stacks. I don't know if the issue is coming from the shape of the stack, but I drag/drop a tif file with the dimension 34,81,1270,1270 (TZXY). I tried to transpose in every possible order, but the output of the code is always :
[INFO] multi-stack tiff read in as having 34 planes 1270 channels
Correcting the Z/T issue is ok, but I can't get it to see the stack as a TZXY
I also tried to use the notebook that I found here but I didn't get any better result.
Can you please help me to see what I am doing wrong ?
Thanks a lot.
Regards, Richard.
Hi,
I saw on the documentation that it was possible to do the segmentation on 3D/4D stacks. My understanding is that ticking the process as 3D box and putting a threshold value would trigger the algorithm to detect 4D stacks. I don't know if the issue is coming from the shape of the stack, but I drag/drop a tif file with the dimension 34,81,1270,1270 (TZXY). I tried to transpose in every possible order, but the output of the code is always :
[INFO] multi-stack tiff read in as having 34 planes 1270 channelsCorrecting the Z/T issue is ok, but I can't get it to see the stack as a TZXY
I also tried to use the notebook that I found here but I didn't get any better result.
Can you please help me to see what I am doing wrong ?
Thanks a lot.
Regards, Richard.