Skip to content

Commit b65ee43

Browse files
author
Quarto GHA Workflow Runner
committed
Built site for gh-pages
1 parent 979dcba commit b65ee43

5 files changed

Lines changed: 46 additions & 46 deletions

File tree

.nojekyll

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1 +1 @@
1-
f792339c
1+
92bf652c

research/index.html

Lines changed: 18 additions & 18 deletions
Original file line numberDiff line numberDiff line change
@@ -226,7 +226,7 @@ <h5 class="quarto-listing-category-title">Categories</h5><div class="quarto-list
226226

227227
<div class="quarto-listing quarto-listing-container-default" id="listing-listing">
228228
<div class="list quarto-listing-default">
229-
<div class="quarto-post image-right" data-index="0" data-categories="VGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDTmV1cmFsJTIwbW9kZWxpbmc=" data-listing-date-sort="1779235200000" data-listing-file-modified-sort="1781694128611" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4" data-listing-word-count-sort="686">
229+
<div class="quarto-post image-right" data-index="0" data-categories="VGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDTmV1cmFsJTIwbW9kZWxpbmc=" data-listing-date-sort="1779235200000" data-listing-file-modified-sort="1781694234221" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4" data-listing-word-count-sort="686">
230230
<div class="thumbnail"><a href="../research/posts/critical_init.html" class="no-external">
231231

232232
<img loading="lazy" src="../research/posts/images/ci_fig1.png" class="thumbnail-image" alt="schematic of neural recordings from mouse V1, whole-brain, and hippocampus; neural activity traces from the population, showing more correlated activity in V1 and whole-brain recordings versus more decorrelated activity in hippocampus">
@@ -253,12 +253,12 @@ <h3 class="no-anchor listing-title">
253253
<div class="metadata">
254254
<a href="../research/posts/critical_init.html" class="no-external">
255255
<div class="listing-author">
256-
Marius Pachitariu, Lin Zhong, Alexa Gracias, Amanda Minisi, Crystall Lopez, Carsen Stringer <br><em>Nature</em>, 2026
256+
Marius Pachitariu, Lin Zhong, Alexa Gracias, Amanda Minisi, Crystall Lopez, Carsen Stringer <br><em><b>Nature</b></em>
257257
</div>
258258
</a>
259259
</div>
260260
</div>
261-
<div class="quarto-post image-right" data-index="1" data-categories="VmlzaW9uJTJDVGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDQmVoYXZpb3IlMkNNYWNoaW5lJTIwbGVhcm5pbmc=" data-listing-date-sort="1769904000000" data-listing-file-modified-sort="1781694128611" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="378">
261+
<div class="quarto-post image-right" data-index="1" data-categories="VmlzaW9uJTJDVGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDQmVoYXZpb3IlMkNNYWNoaW5lJTIwbGVhcm5pbmc=" data-listing-date-sort="1769904000000" data-listing-file-modified-sort="1781694234221" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="378">
262262
<div class="thumbnail"><a href="../research/posts/facevseye.html" class="no-external">
263263

264264
<img loading="lazy" src="../research/posts/images/syeda_cover.png" class="thumbnail-image" alt="neural activity in mouse visual cortex predicted by eye movements versus orofacial movements">
@@ -294,7 +294,7 @@ <h3 class="no-anchor listing-title">
294294
</a>
295295
</div>
296296
</div>
297-
<div class="quarto-post image-right" data-index="2" data-categories="VmlzaW9uJTJDVGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDQmVoYXZpb3I=" data-listing-date-sort="1756684800000" data-listing-file-modified-sort="1781694128718" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="290">
297+
<div class="quarto-post image-right" data-index="2" data-categories="VmlzaW9uJTJDVGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDQmVoYXZpb3I=" data-listing-date-sort="1756684800000" data-listing-file-modified-sort="1781694234317" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="290">
298298
<div class="thumbnail"><a href="../research/posts/spatialpred.html" class="no-external">
299299

300300
<img loading="lazy" src="../research/posts/images/zhang_cover.png" class="thumbnail-image" alt="predictive coding surprise response in visual cortex">
@@ -328,7 +328,7 @@ <h3 class="no-anchor listing-title">
328328
</a>
329329
</div>
330330
</div>
331-
<div class="quarto-post image-right" data-index="3" data-categories="VmlzaW9uJTJDVGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDTWFjaGluZSUyMGxlYXJuaW5n" data-listing-date-sort="1751328000000" data-listing-file-modified-sort="1781694128718" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="547">
331+
<div class="quarto-post image-right" data-index="3" data-categories="VmlzaW9uJTJDVGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDTWFjaGluZSUyMGxlYXJuaW5n" data-listing-date-sort="1751328000000" data-listing-file-modified-sort="1781694234317" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="547">
332332
<div class="thumbnail"><a href="../research/posts/minimodels.html" class="no-external">
333333

334334
<img loading="lazy" src="../research/posts/images/du_cover.jpg" class="thumbnail-image" alt="minimodels for single neurons in V1">
@@ -362,7 +362,7 @@ <h3 class="no-anchor listing-title">
362362
</a>
363363
</div>
364364
</div>
365-
<div class="quarto-post image-right" data-index="4" data-categories="VmlzaW9uJTJDVGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDQmVoYXZpb3I=" data-listing-date-sort="1748736000000" data-listing-file-modified-sort="1781694128718" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="534">
365+
<div class="quarto-post image-right" data-index="4" data-categories="VmlzaW9uJTJDVGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDQmVoYXZpb3I=" data-listing-date-sort="1748736000000" data-listing-file-modified-sort="1781694234317" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="534">
366366
<div class="thumbnail"><a href="../research/posts/unsupervised.html" class="no-external">
367367

368368
<img loading="lazy" src="../research/posts/images/zhong_cover.png" class="thumbnail-image" alt="unsupervised and supervised learning">
@@ -396,7 +396,7 @@ <h3 class="no-anchor listing-title">
396396
</a>
397397
</div>
398398
</div>
399-
<div class="quarto-post image-right" data-index="5" data-categories="U2VnbWVudGF0aW9uJTJDTWFjaGluZSUyMGxlYXJuaW5nJTJDVG9vbHM=" data-listing-date-sort="1739318400000" data-listing-file-modified-sort="1781694128611" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="198">
399+
<div class="quarto-post image-right" data-index="5" data-categories="U2VnbWVudGF0aW9uJTJDTWFjaGluZSUyMGxlYXJuaW5nJTJDVG9vbHM=" data-listing-date-sort="1739318400000" data-listing-file-modified-sort="1781694234221" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="198">
400400
<div class="thumbnail"><a href="../research/posts/cellpose3.html" class="no-external">
401401

402402
<img loading="lazy" src="../research/posts/images/cellpose3_cover.png" class="thumbnail-image" alt="image restoration of various cellular images">
@@ -430,7 +430,7 @@ <h3 class="no-anchor listing-title">
430430
</a>
431431
</div>
432432
</div>
433-
<div class="quarto-post image-right" data-index="6" data-categories="VGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDTWFjaGluZSUyMGxlYXJuaW5nJTJDVG9vbHM=" data-listing-date-sort="1727740800000" data-listing-file-modified-sort="1781694128718" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="323">
433+
<div class="quarto-post image-right" data-index="6" data-categories="VGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDTWFjaGluZSUyMGxlYXJuaW5nJTJDVG9vbHM=" data-listing-date-sort="1727740800000" data-listing-file-modified-sort="1781694234317" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="323">
434434
<div class="thumbnail"><a href="../research/posts/rastermap.html" class="no-external">
435435

436436
<img loading="lazy" src="../research/posts/images/rm_fig3.jpg" class="thumbnail-image" alt="rastermap visualization of neural activity during a virtual reality task">
@@ -464,7 +464,7 @@ <h3 class="no-anchor listing-title">
464464
</a>
465465
</div>
466466
</div>
467-
<div class="quarto-post image-right" data-index="7" data-categories="TWFjaGluZSUyMGxlYXJuaW5nJTJDVG9vbHM=" data-listing-date-sort="1709251200000" data-listing-file-modified-sort="1781694128718" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="183">
467+
<div class="quarto-post image-right" data-index="7" data-categories="TWFjaGluZSUyMGxlYXJuaW5nJTJDVG9vbHM=" data-listing-date-sort="1709251200000" data-listing-file-modified-sort="1781694234317" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="183">
468468
<div class="thumbnail"><a href="../research/posts/kilosort.html" class="no-external">
469469

470470
<img loading="lazy" src="../research/posts/images/kilosort_logo_small.png" class="thumbnail-image" alt="spikes colored by amplitude along probe">
@@ -496,7 +496,7 @@ <h3 class="no-anchor listing-title">
496496
</a>
497497
</div>
498498
</div>
499-
<div class="quarto-post image-right" data-index="8" data-categories="QmVoYXZpb3IlMkNUaG91c2FuZHMlMjBvZiUyMG5ldXJvbnMlMkNNYWNoaW5lJTIwbGVhcm5pbmclMkNUb29scw==" data-listing-date-sort="1698796800000" data-listing-file-modified-sort="1781694128611" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="255">
499+
<div class="quarto-post image-right" data-index="8" data-categories="QmVoYXZpb3IlMkNUaG91c2FuZHMlMjBvZiUyMG5ldXJvbnMlMkNNYWNoaW5lJTIwbGVhcm5pbmclMkNUb29scw==" data-listing-date-sort="1698796800000" data-listing-file-modified-sort="1781694234221" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="255">
500500
<div class="thumbnail"><a href="../research/posts/facemap.html" class="no-external">
501501

502502
<img loading="lazy" src="https://raw.githubusercontent.com/MouseLand/facemap/main/facemap/mouse.png" class="thumbnail-image" alt="facemap">
@@ -532,7 +532,7 @@ <h3 class="no-anchor listing-title">
532532
</a>
533533
</div>
534534
</div>
535-
<div class="quarto-post image-right" data-index="9" data-categories="U2VnbWVudGF0aW9uJTJDTWFjaGluZSUyMGxlYXJuaW5nJTJDVG9vbHM=" data-listing-date-sort="1667779200000" data-listing-file-modified-sort="1781694128611" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="597">
535+
<div class="quarto-post image-right" data-index="9" data-categories="U2VnbWVudGF0aW9uJTJDTWFjaGluZSUyMGxlYXJuaW5nJTJDVG9vbHM=" data-listing-date-sort="1667779200000" data-listing-file-modified-sort="1781694234221" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="597">
536536
<div class="thumbnail"><a href="../research/posts/cellpose2.html" class="no-external">
537537

538538
<img loading="lazy" src="../research/posts/images/cellpose2_cover.png" class="thumbnail-image" alt="retrained network vs original cellpose network on fluorescence and live cell image.">
@@ -566,7 +566,7 @@ <h3 class="no-anchor listing-title">
566566
</a>
567567
</div>
568568
</div>
569-
<div class="quarto-post image-right" data-index="10" data-categories="VGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDQmVoYXZpb3I=" data-listing-date-sort="1651708800000" data-listing-file-modified-sort="1781694128718" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="149">
569+
<div class="quarto-post image-right" data-index="10" data-categories="VGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDQmVoYXZpb3I=" data-listing-date-sort="1651708800000" data-listing-file-modified-sort="1781694234317" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="149">
570570
<div class="thumbnail"><a href="../research/posts/notso.html" class="no-external">
571571

572572
<img loading="lazy" src="../research/posts/images/ns_cover.jpg" class="thumbnail-image" alt="dimensionality of spontaneous activity increases across development, becomes more related to neural activity, and orthogonal to stimulus-driven activity.">
@@ -598,7 +598,7 @@ <h3 class="no-anchor listing-title">
598598
</a>
599599
</div>
600600
</div>
601-
<div class="quarto-post image-right" data-index="11" data-categories="VmlzaW9uJTJDVGhvdXNhbmRzJTIwb2YlMjBuZXVyb25z" data-listing-date-sort="1635724800000" data-listing-file-modified-sort="1781694128611" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="598">
601+
<div class="quarto-post image-right" data-index="11" data-categories="VmlzaW9uJTJDVGhvdXNhbmRzJTIwb2YlMjBuZXVyb25z" data-listing-date-sort="1635724800000" data-listing-file-modified-sort="1781694234221" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="598">
602602
<div class="thumbnail"><a href="../research/posts/highprecision.html" class="no-external">
603603

604604
<img loading="lazy" src="../research/posts/images/hp_cover2.jpg" class="thumbnail-image" alt="highly precise encoding of visual stimuli">
@@ -630,7 +630,7 @@ <h3 class="no-anchor listing-title">
630630
</a>
631631
</div>
632632
</div>
633-
<div class="quarto-post image-right" data-index="12" data-categories="U2VnbWVudGF0aW9uJTJDTWFjaGluZSUyMGxlYXJuaW5nJTJDVG9vbHM=" data-listing-date-sort="1609459200000" data-listing-file-modified-sort="1781694128611" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="393">
633+
<div class="quarto-post image-right" data-index="12" data-categories="U2VnbWVudGF0aW9uJTJDTWFjaGluZSUyMGxlYXJuaW5nJTJDVG9vbHM=" data-listing-date-sort="1609459200000" data-listing-file-modified-sort="1781694234221" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="393">
634634
<div class="thumbnail"><a href="../research/posts/cellpose.html" class="no-external">
635635

636636
<img loading="lazy" src="../research/posts/images/cellpose_cover.png" class="thumbnail-image">
@@ -664,7 +664,7 @@ <h3 class="no-anchor listing-title">
664664
</a>
665665
</div>
666666
</div>
667-
<div class="quarto-post image-right" data-index="13" data-categories="VmlzaW9uJTJDVGhvdXNhbmRzJTIwb2YlMjBuZXVyb25z" data-listing-date-sort="1559347200000" data-listing-file-modified-sort="1781694128611" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="5" data-listing-word-count-sort="829">
667+
<div class="quarto-post image-right" data-index="13" data-categories="VmlzaW9uJTJDVGhvdXNhbmRzJTIwb2YlMjBuZXVyb25z" data-listing-date-sort="1559347200000" data-listing-file-modified-sort="1781694234221" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="5" data-listing-word-count-sort="829">
668668
<div class="thumbnail"><a href="../research/posts/highdim.html" class="no-external">
669669

670670
<img loading="lazy" src="../research/posts/images/hd_cover.png" class="thumbnail-image" alt="neural activity reconstructed from subsets of principal components, and sorted by rastermap">
@@ -696,7 +696,7 @@ <h3 class="no-anchor listing-title">
696696
</a>
697697
</div>
698698
</div>
699-
<div class="quarto-post image-right" data-index="14" data-categories="VGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDQmVoYXZpb3IlMkNNYWNoaW5lJTIwbGVhcm5pbmc=" data-listing-date-sort="1557014400000" data-listing-file-modified-sort="1781694128718" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4" data-listing-word-count-sort="700">
699+
<div class="quarto-post image-right" data-index="14" data-categories="VGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDQmVoYXZpb3IlMkNNYWNoaW5lJTIwbGVhcm5pbmc=" data-listing-date-sort="1557014400000" data-listing-file-modified-sort="1781694234317" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4" data-listing-word-count-sort="700">
700700
<div class="thumbnail"><a href="../research/posts/spontaneous.html" class="no-external">
701701

702702
<img loading="lazy" src="../research/posts/images/spont_cover.jpeg" class="thumbnail-image" alt="neural activity predicted from the principal components of mouse face motion">
@@ -730,7 +730,7 @@ <h3 class="no-anchor listing-title">
730730
</a>
731731
</div>
732732
</div>
733-
<div class="quarto-post image-right" data-index="15" data-categories="VGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDU2VnbWVudGF0aW9uJTJDTWFjaGluZSUyMGxlYXJuaW5nJTJDVG9vbHM=" data-listing-date-sort="1472688000000" data-listing-file-modified-sort="1781694128718" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="141">
733+
<div class="quarto-post image-right" data-index="15" data-categories="VGhvdXNhbmRzJTIwb2YlMjBuZXVyb25zJTJDU2VnbWVudGF0aW9uJTJDTWFjaGluZSUyMGxlYXJuaW5nJTJDVG9vbHM=" data-listing-date-sort="1472688000000" data-listing-file-modified-sort="1781694234317" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="141">
734734
<div class="thumbnail"><a href="../research/posts/suite2p.html" class="no-external">
735735

736736
<img loading="lazy" src="../research/posts/images/suite2p_cover.jpg" class="thumbnail-image" alt="neuron traces and masks">
@@ -766,7 +766,7 @@ <h3 class="no-anchor listing-title">
766766
</a>
767767
</div>
768768
</div>
769-
<div class="quarto-post image-right" data-index="16" data-categories="TmV1cmFsJTIwbW9kZWxpbmclMkNCZWhhdmlvcg==" data-listing-date-sort="1462060800000" data-listing-file-modified-sort="1781694128718" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="463">
769+
<div class="quarto-post image-right" data-index="16" data-categories="TmV1cmFsJTIwbW9kZWxpbmclMkNCZWhhdmlvcg==" data-listing-date-sort="1462060800000" data-listing-file-modified-sort="1781694234317" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="463">
770770
<div class="thumbnail"><a href="../research/posts/inhibitory.html" class="no-external">
771771

772772
<img loading="lazy" src="../research/posts/images/inh_cover.jpg" class="thumbnail-image" alt="neuronal network simulations fit to neural population activity">

research/posts/critical_init.html

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,7 @@
66

77
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
88

9-
<meta name="author" content="Marius Pachitariu, Lin Zhong, Alexa Gracias, Amanda Minisi, Crystall Lopez, Carsen Stringer Nature, 2026">
9+
<meta name="author" content="Marius Pachitariu, Lin Zhong, Alexa Gracias, Amanda Minisi, Crystall Lopez, Carsen Stringer Nature">
1010
<meta name="description" content="Neural recordings resemble linear dynamical systems governed by a symmetric connectivity matrix.">
1111

1212
<title>A critical initialization for biological neural networks – Pachitariu-Stringer Lab</title>
@@ -155,7 +155,7 @@ <h1 class="title">A critical initialization for biological neural networks</h1>
155155
<div>
156156
<div class="quarto-title-meta-heading">Author</div>
157157
<div class="quarto-title-meta-contents">
158-
<p>Marius Pachitariu, Lin Zhong, Alexa Gracias, Amanda Minisi, Crystall Lopez, Carsen Stringer <br><em>Nature</em>, 2026 </p>
158+
<p>Marius Pachitariu, Lin Zhong, Alexa Gracias, Amanda Minisi, Crystall Lopez, Carsen Stringer <br><em><b>Nature</b></em> </p>
159159
</div>
160160
</div>
161161

0 commit comments

Comments
 (0)