I am performing SPOTlight and I am getting this error:
#res <- SPOTlight(
- x = sce1,
- y = stRNA,
- groups = sce$t_group,
- mgs = mgs_df,
- hvg = hvg,
- weight_id = "mean.AUC",
- group_id = "cluster",
- gene_id = "gene")
Error in .extract_counts(y, assay, slot) :
assay %in% SeuratObject::Assays(x) is not TRUE
I am performing SPOTlight and I am getting this error:
#res <- SPOTlight(
Error in .extract_counts(y, assay, slot) :
assay %in% SeuratObject::Assays(x) is not TRUE