rule bsseq will fail if min_cpg or min_diff are too stringent

[knokknok]

wg-blimp/snakemake_wrapper/scripts/bsseq.R

Line 55 in b63eaba

plotManyRegions(smoothedData[!invalidRows], regions = dmrs[seq_len(maxNumOfRegions),], addRegions = dmrs, extend = 5000)

This errors if dmrs has no rows.

[JakeLehle]

Thank you for bringing up #29, #30, and #31. I remember there being a number of errors that can occur when running the R scripts that I would often have to hack around. Let me take a look at them this weekend and maybe we can pull a branch that incorporates them to test them out before submitting for a merge.

Be in touch soon.