error: The columns are not present in your tibble

[skylarsiwu0113]

Hi, I tried to use the example script to run the package (https://github.com/MangiolaLaboratory/sccomp), but it showed error: Error in check_columns_exist(.data, c(quo_name(.sample), quo_name(.cell_group), :
The columns are not present in your tibble. I used the example data in the tutorial. I also applied the same script on my own dataset and made sure that the colnames are present. Could you please let me know why this issue happened and how to fix it? Thank you

[stemangiola]

Hello @skylarsiwu0113 please update to the latest github version and try again.

[skylarsiwu0113]

Thank you @stemangiola I've updated to the latest github version, the above error disappeared. But showed new error: Error in mod$sample(data = data_for_model, chains = chains, parallel_chains = chains, :
unused argument (cmdstanr_warn_inits = FALSE)
My current version is ‘2.1.23’, cmdstanr version is '0.9.0', and cmdstanr::cmdstan_version() is "2.38.0". Could you please guide how to fix it? Thanks

[stemangiola]

Hello, could you paste the code, using sccomp test dataset with the error. Also print sessionInfo().

[stemangiola]

Can you please try to install cmdstanr from github?