The EnsDb.Hsapiens.v86 is used in serveral parts of the pipeline for gene mapping. It’s unclear in the pipeline whether the input corresponds to reference hg38 or hg19.
I think that using library(EnsDb.Hsapiens.v86) indicates the hg38 reference genome, while EnsDb.Hsapiens.v75 is used for hg19.
The
EnsDb.Hsapiens.v86is used in serveral parts of the pipeline for gene mapping. It’s unclear in the pipeline whether the input corresponds to reference hg38 or hg19.I think that using
library(EnsDb.Hsapiens.v86)indicates the hg38 reference genome, while EnsDb.Hsapiens.v75 is used for hg19.