From 73d4145f500db84293fae1a2dd453932e3dab269 Mon Sep 17 00:00:00 2001
From: Tom Palmer <remlapmot@hotmail.com>
Date: Tue, 28 Jul 2026 06:40:03 +0100
Subject: [PATCH 1/2] Fix GHA build failure with Deriv 4.3.0
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Deriv is a dependency of car

car (Suggests) → pbkrtest → doBy → Deriv
---
 .github/workflows/check-full.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/check-full.yaml b/.github/workflows/check-full.yaml
index 59bb157f..ed718385 100644
--- a/.github/workflows/check-full.yaml
+++ b/.github/workflows/check-full.yaml
@@ -73,7 +73,7 @@ jobs:
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           extra-packages: >
-            any::rcmdcheck, MendelianRandomization=?ignore-before-r=4.4.0, car=?ignore-before-r=4.3.2, Cairo=?ignore-before-r=4.3.0, meta=?ignore-before-r=4.4.0, mr.raps=?ignore-before-r=4.5.0
+            any::rcmdcheck, MendelianRandomization=?ignore-before-r=4.4.0, car=?ignore-before-r=4.5.0, Cairo=?ignore-before-r=4.3.0, meta=?ignore-before-r=4.4.0, mr.raps=?ignore-before-r=4.5.0
           needs: check
           upgrade: 'TRUE'
 

From 4633f125f96da613123d6960ea02410abe03c085 Mon Sep 17 00:00:00 2001
From: Tom Palmer <remlapmot@hotmail.com>
Date: Tue, 28 Jul 2026 06:41:28 +0100
Subject: [PATCH 2/2] Amend > to | in vignette YAML header

---
 vignettes/exposure.Rmd     | 2 +-
 vignettes/gwas2020.Rmd     | 2 +-
 vignettes/harmonise.Rmd    | 2 +-
 vignettes/introduction.Rmd | 2 +-
 vignettes/outcome.Rmd      | 2 +-
 vignettes/perform_mr.Rmd   | 2 +-
 6 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/vignettes/exposure.Rmd b/vignettes/exposure.Rmd
index 59b94c11..6c186233 100644
--- a/vignettes/exposure.Rmd
+++ b/vignettes/exposure.Rmd
@@ -6,7 +6,7 @@ output:
     toc: true
     toc_depth: 2
 bibliography: refs.bib
-vignette: >
+vignette: |
   %\VignetteIndexEntry{Exposure data}
   %\VignetteEngine{knitr::rmarkdown}
   %\VignetteEncoding{UTF-8}
diff --git a/vignettes/gwas2020.Rmd b/vignettes/gwas2020.Rmd
index 0533e0ff..8fcd7fbb 100644
--- a/vignettes/gwas2020.Rmd
+++ b/vignettes/gwas2020.Rmd
@@ -1,7 +1,7 @@
 ---
 title: "Major changes to the IEU GWAS resources for 2020"
 output: rmarkdown::html_vignette
-vignette: >
+vignette: |
   %\VignetteIndexEntry{Major changes to the IEU GWAS resources for 2020}
   %\VignetteEngine{knitr::rmarkdown}
   %\VignetteEncoding{UTF-8}
diff --git a/vignettes/harmonise.Rmd b/vignettes/harmonise.Rmd
index bc16ee77..538513fa 100644
--- a/vignettes/harmonise.Rmd
+++ b/vignettes/harmonise.Rmd
@@ -6,7 +6,7 @@ output:
     toc: true
     toc_depth: 2
 bibliography: refs.bib
-vignette: >
+vignette: |
   %\VignetteIndexEntry{Harmonise data}
   %\VignetteEngine{knitr::rmarkdown}
   %\VignetteEncoding{UTF-8}
diff --git a/vignettes/introduction.Rmd b/vignettes/introduction.Rmd
index 02adb54c..236b5dfc 100644
--- a/vignettes/introduction.Rmd
+++ b/vignettes/introduction.Rmd
@@ -6,7 +6,7 @@ output:
     toc: true
     toc_depth: 2
 bibliography: refs.bib
-vignette: >
+vignette: |
   %\VignetteIndexEntry{Introduction}
   %\VignetteEngine{knitr::rmarkdown}
   %\VignetteEncoding{UTF-8}
diff --git a/vignettes/outcome.Rmd b/vignettes/outcome.Rmd
index 057f5363..4a02cfab 100644
--- a/vignettes/outcome.Rmd
+++ b/vignettes/outcome.Rmd
@@ -6,7 +6,7 @@ output:
     toc: true
     toc_depth: 2
 bibliography: refs.bib
-vignette: >
+vignette: |
   %\VignetteIndexEntry{Outcome data}
   %\VignetteEngine{knitr::rmarkdown}
   %\VignetteEncoding{UTF-8}
diff --git a/vignettes/perform_mr.Rmd b/vignettes/perform_mr.Rmd
index a7b94fdd..27607476 100644
--- a/vignettes/perform_mr.Rmd
+++ b/vignettes/perform_mr.Rmd
@@ -6,7 +6,7 @@ output:
     toc: true
     toc_depth: 2
 bibliography: refs.bib
-vignette: >
+vignette: |
   %\VignetteIndexEntry{Perform MR}
   %\VignetteEngine{knitr::rmarkdown}
   %\VignetteEncoding{UTF-8}