Write user guides covering running the Snakemake pipeline (replacing the old law run commands), cluster profile setup and required environment variables, waveform generation options, online pipeline architecture, and a v1 -> v2 migration reference for users familiar with the Law/Luigi workflow.
Write user guides covering running the Snakemake pipeline (replacing the old
law runcommands), cluster profile setup and required environment variables, waveform generation options, online pipeline architecture, and a v1 -> v2 migration reference for users familiar with the Law/Luigi workflow.