2021-11-26T16:51:46.1706380Z Found online and idle hosted runner in the current repository's organization account that matches the required labels: 'ubuntu-latest'
2021-11-26T16:51:46.2409723Z Waiting for a Hosted runner in the 'organization' to pick this job...
2021-11-26T16:51:46.4725503Z Job is waiting for a hosted runner to come online.
2021-11-26T16:51:48.9961265Z Job is about to start running on the hosted runner: GitHub Actions 2 (hosted)
2021-11-26T16:51:51.3640056Z Current runner version: '2.284.0'
2021-11-26T16:51:51.3671524Z ##[group]Operating System
2021-11-26T16:51:51.3672572Z Ubuntu
2021-11-26T16:51:51.3673057Z 20.04.3
2021-11-26T16:51:51.3673613Z LTS
2021-11-26T16:51:51.3674193Z ##[endgroup]
2021-11-26T16:51:51.3674804Z ##[group]Virtual Environment
2021-11-26T16:51:51.3675557Z Environment: ubuntu-20.04
2021-11-26T16:51:51.3676463Z Version: 20211122.1
2021-11-26T16:51:51.3677608Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20211122.1/images/linux/Ubuntu2004-README.md
2021-11-26T16:51:51.3679193Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20211122.1
2021-11-26T16:51:51.3680227Z ##[endgroup]
2021-11-26T16:51:51.3680900Z ##[group]Virtual Environment Provisioner
2021-11-26T16:51:51.3681674Z 1.0.0.0-master-20211123-1
2021-11-26T16:51:51.3682348Z ##[endgroup]
2021-11-26T16:51:51.3684599Z ##[group]GITHUB_TOKEN Permissions
2021-11-26T16:51:51.3686167Z Actions: write
2021-11-26T16:51:51.3686844Z Checks: write
2021-11-26T16:51:51.3687460Z Contents: write
2021-11-26T16:51:51.3688054Z Deployments: write
2021-11-26T16:51:51.3688714Z Discussions: write
2021-11-26T16:51:51.3689286Z Issues: write
2021-11-26T16:51:51.3689914Z Metadata: read
2021-11-26T16:51:51.3690527Z Packages: write
2021-11-26T16:51:51.3691139Z Pages: write
2021-11-26T16:51:51.3691781Z PullRequests: write
2021-11-26T16:51:51.3692545Z RepositoryProjects: write
2021-11-26T16:51:51.3693277Z SecurityEvents: write
2021-11-26T16:51:51.3693945Z Statuses: write
2021-11-26T16:51:51.3694623Z ##[endgroup]
2021-11-26T16:51:51.3698000Z Prepare workflow directory
2021-11-26T16:51:51.4368360Z Prepare all required actions
2021-11-26T16:51:51.4379135Z Getting action download info
2021-11-26T16:51:51.7019283Z Download action repository 'actions/checkout@v2' (SHA:ec3a7ce113134d7a93b817d10a8272cb61118579)
2021-11-26T16:51:53.8130889Z Download action repository 'actions/setup-python@v2' (SHA:0066b88440aa9562be742e2c60ee750fc57d8849)
2021-11-26T16:51:54.4647398Z Download action repository 'codecov/codecov-action@v1' (SHA:29386c70ef20e286228c72b668a06fd0e8399192)
2021-11-26T16:51:55.1446738Z ##[group]Run actions/checkout@v2
2021-11-26T16:51:55.1447413Z with:
2021-11-26T16:51:55.1447959Z repository: MEG-SPIKES/megspikes
2021-11-26T16:51:55.1449101Z token: ***
2021-11-26T16:51:55.1449547Z ssh-strict: true
2021-11-26T16:51:55.1450127Z persist-credentials: true
2021-11-26T16:51:55.1450669Z clean: true
2021-11-26T16:51:55.1451122Z fetch-depth: 1
2021-11-26T16:51:55.1451555Z lfs: false
2021-11-26T16:51:55.1452001Z submodules: false
2021-11-26T16:51:55.1455331Z ##[endgroup]
2021-11-26T16:51:55.8240367Z Syncing repository: MEG-SPIKES/megspikes
2021-11-26T16:51:55.8242098Z ##[group]Getting Git version info
2021-11-26T16:51:55.8243268Z Working directory is '/home/runner/work/megspikes/megspikes'
2021-11-26T16:51:55.8244848Z [command]/usr/bin/git version
2021-11-26T16:51:55.8245480Z git version 2.34.0
2021-11-26T16:51:55.8247763Z ##[endgroup]
2021-11-26T16:51:55.8248830Z Deleting the contents of '/home/runner/work/megspikes/megspikes'
2021-11-26T16:51:55.8251575Z ##[group]Initializing the repository
2021-11-26T16:51:55.8252496Z [command]/usr/bin/git init /home/runner/work/megspikes/megspikes
2021-11-26T16:51:55.8253784Z hint: Using 'master' as the name for the initial branch. This default branch name
2021-11-26T16:51:55.8254850Z hint: is subject to change. To configure the initial branch name to use in all
2021-11-26T16:51:55.8255895Z hint: of your new repositories, which will suppress this warning, call:
2021-11-26T16:51:55.8256662Z hint:
2021-11-26T16:51:55.8257912Z hint: git config --global init.defaultBranch <name>
2021-11-26T16:51:55.8258692Z hint:
2021-11-26T16:51:55.8259636Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and
2021-11-26T16:51:55.8260893Z hint: 'development'. The just-created branch can be renamed via this command:
2021-11-26T16:51:55.8261921Z hint:
2021-11-26T16:51:55.8262665Z hint: git branch -m <name>
2021-11-26T16:51:55.8263997Z Initialized empty Git repository in /home/runner/work/megspikes/megspikes/.git/
2021-11-26T16:51:55.8265477Z [command]/usr/bin/git remote add origin https://github.com/MEG-SPIKES/megspikes
2021-11-26T16:51:55.8267013Z ##[endgroup]
2021-11-26T16:51:55.8268299Z ##[group]Disabling automatic garbage collection
2021-11-26T16:51:55.8269374Z [command]/usr/bin/git config --local gc.auto 0
2021-11-26T16:51:55.8270617Z ##[endgroup]
2021-11-26T16:51:55.8273689Z ##[group]Setting up auth
2021-11-26T16:51:55.8274823Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2021-11-26T16:51:55.8276821Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :
2021-11-26T16:51:55.8278702Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2021-11-26T16:51:55.8280956Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :
2021-11-26T16:51:55.8283176Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic ***
2021-11-26T16:51:55.8284791Z ##[endgroup]
2021-11-26T16:51:55.8286023Z ##[group]Fetching the repository
2021-11-26T16:51:55.8288029Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +35208400d8810f7445030b7442123d022fba6d6e:refs/remotes/origin/main
2021-11-26T16:51:55.9992801Z remote: Enumerating objects: 67, done.
2021-11-26T16:51:55.9994184Z remote: Counting objects: 1% (1/67)
2021-11-26T16:51:55.9995583Z remote: Counting objects: 2% (2/67)
2021-11-26T16:51:55.9996546Z remote: Counting objects: 4% (3/67)
2021-11-26T16:51:55.9997250Z remote: Counting objects: 5% (4/67)
2021-11-26T16:51:55.9997965Z remote: Counting objects: 7% (5/67)
2021-11-26T16:51:55.9999061Z remote: Counting objects: 8% (6/67)
2021-11-26T16:51:55.9999776Z remote: Counting objects: 10% (7/67)
2021-11-26T16:51:56.0000482Z remote: Counting objects: 11% (8/67)
2021-11-26T16:51:56.0001173Z remote: Counting objects: 13% (9/67)
2021-11-26T16:51:56.0001876Z remote: Counting objects: 14% (10/67)
2021-11-26T16:51:56.0002584Z remote: Counting objects: 16% (11/67)
2021-11-26T16:51:56.0003273Z remote: Counting objects: 17% (12/67)
2021-11-26T16:51:56.0004097Z remote: Counting objects: 19% (13/67)
2021-11-26T16:51:56.0004803Z remote: Counting objects: 20% (14/67)
2021-11-26T16:51:56.0005508Z remote: Counting objects: 22% (15/67)
2021-11-26T16:51:56.0006198Z remote: Counting objects: 23% (16/67)
2021-11-26T16:51:56.0006897Z remote: Counting objects: 25% (17/67)
2021-11-26T16:51:56.0007593Z remote: Counting objects: 26% (18/67)
2021-11-26T16:51:56.0008315Z remote: Counting objects: 28% (19/67)
2021-11-26T16:51:56.0009021Z remote: Counting objects: 29% (20/67)
2021-11-26T16:51:56.0009708Z remote: Counting objects: 31% (21/67)
2021-11-26T16:51:56.0010403Z remote: Counting objects: 32% (22/67)
2021-11-26T16:51:56.0011106Z remote: Counting objects: 34% (23/67)
2021-11-26T16:51:56.0011789Z remote: Counting objects: 35% (24/67)
2021-11-26T16:51:56.0012577Z remote: Counting objects: 37% (25/67)
2021-11-26T16:51:56.0013344Z remote: Counting objects: 38% (26/67)
2021-11-26T16:51:56.0014022Z remote: Counting objects: 40% (27/67)
2021-11-26T16:51:56.0014723Z remote: Counting objects: 41% (28/67)
2021-11-26T16:51:56.0015423Z remote: Counting objects: 43% (29/67)
2021-11-26T16:51:56.0016104Z remote: Counting objects: 44% (30/67)
2021-11-26T16:51:56.0017008Z remote: Counting objects: 46% (31/67)
2021-11-26T16:51:56.0017715Z remote: Counting objects: 47% (32/67)
2021-11-26T16:51:56.0018615Z remote: Counting objects: 49% (33/67)
2021-11-26T16:51:56.0019310Z remote: Counting objects: 50% (34/67)
2021-11-26T16:51:56.0020018Z remote: Counting objects: 52% (35/67)
2021-11-26T16:51:56.0020703Z remote: Counting objects: 53% (36/67)
2021-11-26T16:51:56.0021405Z remote: Counting objects: 55% (37/67)
2021-11-26T16:51:56.0022107Z remote: Counting objects: 56% (38/67)
2021-11-26T16:51:56.0022794Z remote: Counting objects: 58% (39/67)
2021-11-26T16:51:56.0023491Z remote: Counting objects: 59% (40/67)
2021-11-26T16:51:56.0024194Z remote: Counting objects: 61% (41/67)
2021-11-26T16:51:56.0024880Z remote: Counting objects: 62% (42/67)
2021-11-26T16:51:56.0025581Z remote: Counting objects: 64% (43/67)
2021-11-26T16:51:56.0026287Z remote: Counting objects: 65% (44/67)
2021-11-26T16:51:56.0026976Z remote: Counting objects: 67% (45/67)
2021-11-26T16:51:56.0027676Z remote: Counting objects: 68% (46/67)
2021-11-26T16:51:56.0028373Z remote: Counting objects: 70% (47/67)
2021-11-26T16:51:56.0029074Z remote: Counting objects: 71% (48/67)
2021-11-26T16:51:56.0029772Z remote: Counting objects: 73% (49/67)
2021-11-26T16:51:56.0030458Z remote: Counting objects: 74% (50/67)
2021-11-26T16:51:56.0031156Z remote: Counting objects: 76% (51/67)
2021-11-26T16:51:56.0031853Z remote: Counting objects: 77% (52/67)
2021-11-26T16:51:56.0032537Z remote: Counting objects: 79% (53/67)
2021-11-26T16:51:56.0033231Z remote: Counting objects: 80% (54/67)
2021-11-26T16:51:56.0033927Z remote: Counting objects: 82% (55/67)
2021-11-26T16:51:56.0034605Z remote: Counting objects: 83% (56/67)
2021-11-26T16:51:56.0035301Z remote: Counting objects: 85% (57/67)
2021-11-26T16:51:56.0036220Z remote: Counting objects: 86% (58/67)
2021-11-26T16:51:56.0036949Z remote: Counting objects: 88% (59/67)
2021-11-26T16:51:56.0037781Z remote: Counting objects: 89% (60/67)
2021-11-26T16:51:56.0038496Z remote: Counting objects: 91% (61/67)
2021-11-26T16:51:56.0039185Z remote: Counting objects: 92% (62/67)
2021-11-26T16:51:56.0039886Z remote: Counting objects: 94% (63/67)
2021-11-26T16:51:56.0040567Z remote: Counting objects: 95% (64/67)
2021-11-26T16:51:56.0041267Z remote: Counting objects: 97% (65/67)
2021-11-26T16:51:56.0041964Z remote: Counting objects: 98% (66/67)
2021-11-26T16:51:56.0042648Z remote: Counting objects: 100% (67/67)
2021-11-26T16:51:56.0043378Z remote: Counting objects: 100% (67/67), done.
2021-11-26T16:51:56.0044154Z remote: Compressing objects: 1% (1/63)
2021-11-26T16:51:56.0044908Z remote: Compressing objects: 3% (2/63)
2021-11-26T16:51:56.0045673Z remote: Compressing objects: 4% (3/63)
2021-11-26T16:51:56.0046439Z remote: Compressing objects: 6% (4/63)
2021-11-26T16:51:56.0047262Z remote: Compressing objects: 7% (5/63)
2021-11-26T16:51:56.0048034Z remote: Compressing objects: 9% (6/63)
2021-11-26T16:51:56.0048803Z remote: Compressing objects: 11% (7/63)
2021-11-26T16:51:56.0049550Z remote: Compressing objects: 12% (8/63)
2021-11-26T16:51:56.0050304Z remote: Compressing objects: 14% (9/63)
2021-11-26T16:51:56.0057972Z remote: Compressing objects: 15% (10/63)
2021-11-26T16:51:56.0065973Z remote: Compressing objects: 17% (11/63)
2021-11-26T16:51:56.0066767Z remote: Compressing objects: 19% (12/63)
2021-11-26T16:51:56.0067469Z remote: Compressing objects: 20% (13/63)
2021-11-26T16:51:56.0068152Z remote: Compressing objects: 22% (14/63)
2021-11-26T16:51:56.0068945Z remote: Compressing objects: 23% (15/63)
2021-11-26T16:51:56.0069593Z remote: Compressing objects: 25% (16/63)
2021-11-26T16:51:56.0070218Z remote: Compressing objects: 26% (17/63)
2021-11-26T16:51:56.0071102Z remote: Compressing objects: 28% (18/63)
2021-11-26T16:51:56.0071764Z remote: Compressing objects: 30% (19/63)
2021-11-26T16:51:56.0072390Z remote: Compressing objects: 31% (20/63)
2021-11-26T16:51:56.0073031Z remote: Compressing objects: 33% (21/63)
2021-11-26T16:51:56.0101848Z remote: Compressing objects: 34% (22/63)
2021-11-26T16:51:56.0102729Z remote: Compressing objects: 36% (23/63)
2021-11-26T16:51:56.0103828Z remote: Compressing objects: 38% (24/63)
2021-11-26T16:51:56.0117135Z remote: Compressing objects: 39% (25/63)
2021-11-26T16:51:56.0117821Z remote: Compressing objects: 41% (26/63)
2021-11-26T16:51:56.0118459Z remote: Compressing objects: 42% (27/63)
2021-11-26T16:51:56.0119109Z remote: Compressing objects: 44% (28/63)
2021-11-26T16:51:56.0119756Z remote: Compressing objects: 46% (29/63)
2021-11-26T16:51:56.0120384Z remote: Compressing objects: 47% (30/63)
2021-11-26T16:51:56.0121081Z remote: Compressing objects: 49% (31/63)
2021-11-26T16:51:56.0121721Z remote: Compressing objects: 50% (32/63)
2021-11-26T16:51:56.0122360Z remote: Compressing objects: 52% (33/63)
2021-11-26T16:51:56.0123004Z remote: Compressing objects: 53% (34/63)
2021-11-26T16:51:56.0123629Z remote: Compressing objects: 55% (35/63)
2021-11-26T16:51:56.0194134Z remote: Compressing objects: 57% (36/63)
2021-11-26T16:51:56.0194879Z remote: Compressing objects: 58% (37/63)
2021-11-26T16:51:56.0195585Z remote: Compressing objects: 60% (38/63)
2021-11-26T16:51:56.0197074Z remote: Compressing objects: 61% (39/63)
2021-11-26T16:51:56.0199496Z remote: Compressing objects: 63% (40/63)
2021-11-26T16:51:56.0200172Z remote: Compressing objects: 65% (41/63)
2021-11-26T16:51:56.0200818Z remote: Compressing objects: 66% (42/63)
2021-11-26T16:51:56.0201464Z remote: Compressing objects: 68% (43/63)
2021-11-26T16:51:56.0202345Z remote: Compressing objects: 69% (44/63)
2021-11-26T16:51:56.0203000Z remote: Compressing objects: 71% (45/63)
2021-11-26T16:51:56.0203645Z remote: Compressing objects: 73% (46/63)
2021-11-26T16:51:56.0204274Z remote: Compressing objects: 74% (47/63)
2021-11-26T16:51:56.0206200Z remote: Compressing objects: 76% (48/63)
2021-11-26T16:51:56.0208944Z remote: Compressing objects: 77% (49/63)
2021-11-26T16:51:56.0209551Z remote: Compressing objects: 79% (50/63)
2021-11-26T16:51:56.0210152Z remote: Compressing objects: 80% (51/63)
2021-11-26T16:51:56.0210755Z remote: Compressing objects: 82% (52/63)
2021-11-26T16:51:56.0211548Z remote: Compressing objects: 84% (53/63)
2021-11-26T16:51:56.0212188Z remote: Compressing objects: 85% (54/63)
2021-11-26T16:51:56.0212843Z remote: Compressing objects: 87% (55/63)
2021-11-26T16:51:56.0213477Z remote: Compressing objects: 88% (56/63)
2021-11-26T16:51:56.0214150Z remote: Compressing objects: 90% (57/63)
2021-11-26T16:51:56.0214780Z remote: Compressing objects: 92% (58/63)
2021-11-26T16:51:56.0215420Z remote: Compressing objects: 93% (59/63)
2021-11-26T16:51:56.0216056Z remote: Compressing objects: 95% (60/63)
2021-11-26T16:51:56.0216683Z remote: Compressing objects: 96% (61/63)
2021-11-26T16:51:56.0217326Z remote: Compressing objects: 98% (62/63)
2021-11-26T16:51:56.0218046Z remote: Compressing objects: 100% (63/63)
2021-11-26T16:51:56.0218842Z remote: Compressing objects: 100% (63/63), done.
2021-11-26T16:51:56.1780328Z remote: Total 67 (delta 2), reused 32 (delta 1), pack-reused 0
2021-11-26T16:51:56.1977401Z From https://github.com/MEG-SPIKES/megspikes
2021-11-26T16:51:56.1979542Z * [new ref] 35208400d8810f7445030b7442123d022fba6d6e -> origin/main
2021-11-26T16:51:56.2015691Z ##[endgroup]
2021-11-26T16:51:56.2017358Z ##[group]Determining the checkout info
2021-11-26T16:51:56.2019063Z ##[endgroup]
2021-11-26T16:51:56.2020374Z ##[group]Checking out the ref
2021-11-26T16:51:56.2023081Z [command]/usr/bin/git checkout --progress --force -B main refs/remotes/origin/main
2021-11-26T16:51:56.2262942Z Switched to a new branch 'main'
2021-11-26T16:51:56.2265757Z Branch 'main' set up to track remote branch 'main' from 'origin'.
2021-11-26T16:51:56.2302341Z ##[endgroup]
2021-11-26T16:51:56.2356581Z [command]/usr/bin/git log -1 --format='%H'
2021-11-26T16:51:56.2382916Z '35208400d8810f7445030b7442123d022fba6d6e'
2021-11-26T16:51:56.2654253Z ##[group]Run actions/setup-python@v2
2021-11-26T16:51:56.2654790Z with:
2021-11-26T16:51:56.2655216Z python-version: 3.7
2021-11-26T16:51:56.2656368Z token: ***
2021-11-26T16:51:56.2656788Z ##[endgroup]
2021-11-26T16:51:56.4295471Z Successfully setup CPython (3.7.12)
2021-11-26T16:51:56.4403852Z ##[group]Run python -m pip install --upgrade pip
2021-11-26T16:51:56.4404615Z �[36;1mpython -m pip install --upgrade pip�[0m
2021-11-26T16:51:56.4405352Z �[36;1mpython -m pip install flake8 pytest pytest-cov�[0m
2021-11-26T16:51:56.4406068Z �[36;1mpip install -r requirements.txt�[0m
2021-11-26T16:51:56.4461093Z shell: /usr/bin/bash -e {0}
2021-11-26T16:51:56.4461549Z env:
2021-11-26T16:51:56.4462178Z pythonLocation: /opt/hostedtoolcache/Python/3.7.12/x64
2021-11-26T16:51:56.4463271Z LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.7.12/x64/lib
2021-11-26T16:51:56.4463885Z ##[endgroup]
2021-11-26T16:52:01.3148812Z Requirement already satisfied: pip in /opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages (21.3.1)
2021-11-26T16:52:02.4836681Z Collecting flake8
2021-11-26T16:52:02.5197574Z Downloading flake8-4.0.1-py2.py3-none-any.whl (64 kB)
2021-11-26T16:52:02.6927704Z Collecting pytest
2021-11-26T16:52:02.7016331Z Downloading pytest-6.2.5-py3-none-any.whl (280 kB)
2021-11-26T16:52:02.7645551Z Collecting pytest-cov
2021-11-26T16:52:02.7738026Z Downloading pytest_cov-3.0.0-py3-none-any.whl (20 kB)
2021-11-26T16:52:02.8952136Z Collecting importlib-metadata<4.3
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2021-11-26T16:52:42.0308149Z Requirement already satisfied: tomli>=1.0.0 in /opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages (from setuptools-scm>=4->matplotlib>=3.4.3->-r requirements.txt (line 3)) (1.2.2)
2021-11-26T16:52:42.0311045Z Requirement already satisfied: setuptools in /opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages (from setuptools-scm>=4->matplotlib>=3.4.3->-r requirements.txt (line 3)) (47.1.0)
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2021-11-26T16:52:42.5912998Z Collecting webencodings
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2021-11-26T16:52:43.0897880Z Collecting debugpy<2.0,>=1.0.0
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2021-11-26T16:52:43.4321546Z Collecting argcomplete>=1.12.3
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2021-11-26T16:52:44.0507172Z Collecting pandocfilters>=1.4.1
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2021-11-26T16:52:44.1232747Z Collecting pygments>=2.4.1
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2021-11-26T16:52:44.2089334Z Collecting mistune<2,>=0.8.1
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2021-11-26T16:52:44.2390875Z Collecting testpath
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2021-11-26T16:52:44.7957921Z Collecting llvmlite<0.38,>=0.37.0rc1
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2021-11-26T16:52:45.7770414Z Collecting prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0
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2021-11-26T16:52:45.8297727Z Collecting decorator
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2021-11-26T16:52:45.8591574Z Collecting pickleshare
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2021-11-26T16:52:46.0032769Z Collecting importlib-resources>=1.4.0
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2021-11-26T16:52:46.0639487Z Collecting pyrsistent!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0
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2021-11-26T16:52:47.1062832Z Collecting aiohttp
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2021-11-26T16:52:47.3304264Z Collecting parso<0.9.0,>=0.8.0
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2021-11-26T16:52:47.4146689Z Collecting wcwidth
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2021-11-26T16:52:47.5688150Z Collecting asynctest==0.13.0
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2021-11-26T16:52:48.2505444Z Collecting multidict<7.0,>=4.5
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2021-11-26T16:52:48.3623511Z Collecting frozenlist>=1.1.1
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2021-11-26T16:52:48.4140643Z Collecting aiosignal>=1.1.2
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2021-11-26T16:52:48.8631737Z Collecting yarl<2.0,>=1.0
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2021-11-26T16:52:49.1868300Z Building wheels for collected packages: alphacsc
2021-11-26T16:52:49.1881184Z Building wheel for alphacsc (pyproject.toml): started
2021-11-26T16:53:25.7439979Z Building wheel for alphacsc (pyproject.toml): finished with status 'done'
2021-11-26T16:53:25.7713267Z Created wheel for alphacsc: filename=alphacsc-0.4.dev28+g7f10337-cp37-cp37m-linux_x86_64.whl size=7386396 sha256=ee37dd2e564301eedb3755a70510f61a58e3873b3112cbb1ec66a6684aabf8a6
2021-11-26T16:53:25.7719085Z Stored in directory: /tmp/pip-ephem-wheel-cache-tz3ixz60/wheels/f2/c8/79/1deb4d532b9fc61ffaace73a3d0f7b575e45ac3d91512f23a4
2021-11-26T16:53:25.7788594Z Successfully built alphacsc
2021-11-26T16:53:27.1687288Z Installing collected packages: multidict, idna, frozenlist, yarl, traitlets, six, pyrsistent, MarkupSafe, importlib-resources, importlib-metadata, charset-normalizer, asynctest, async-timeout, aiosignal, webencodings, wcwidth, urllib3, tornado, setuptools-scm, pyzmq, pyyaml, python-dateutil, ptyprocess, pillow, parso, param, numpy, nest-asyncio, kiwisolver, jupyter-core, jsonschema, jinja2, ipython-genutils, fonttools, entrypoints, cycler, certifi, aiohttp, wslink, tqdm, requests, pyviz-comms, pytz, pygments, pyct, pycparser, prompt-toolkit, pickleshare, pexpect, nbformat, matplotlib-inline, matplotlib, markdown, jupyter-client, jedi, decorator, bokeh, bleach, backcall, vtk, threadpoolctl, testpath, scooby, scipy, panel, pandocfilters, pandas, nbclient, mistune, meshio, llvmlite, jupyterlab-pygments, joblib, ipython, imageio, defusedxml, debugpy, colorcet, cffi, argcomplete, appdirs, terminado, Send2Trash, scikit-learn, QtPy, pyvista, PyQt5-sip, PyQt5-Qt5, prometheus-client, numba, nibabel, nbconvert, mne, ipykernel, holoviews, et-xmlfile, cftime, argon2-cffi, xarray, pyvistaqt, pyqt5, pooch, openpyxl, notebook, nilearn, netCDF4, hvplot, alphacsc
2021-11-26T16:53:27.4942642Z Attempting uninstall: importlib-metadata
2021-11-26T16:53:27.4946242Z Found existing installation: importlib-metadata 4.2.0
2021-11-26T16:53:27.4994502Z Uninstalling importlib-metadata-4.2.0:
2021-11-26T16:53:27.5003819Z Successfully uninstalled importlib-metadata-4.2.0
2021-11-26T16:54:06.5017524Z ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2021-11-26T16:54:06.5029904Z Successfully installed MarkupSafe-2.0.1 PyQt5-Qt5-5.15.2 PyQt5-sip-12.9.0 QtPy-1.11.2 Send2Trash-1.8.0 aiohttp-3.8.1 aiosignal-1.2.0 alphacsc-0.4.dev28+g7f10337 appdirs-1.4.4 argcomplete-1.12.3 argon2-cffi-21.1.0 async-timeout-4.0.1 asynctest-0.13.0 backcall-0.2.0 bleach-4.1.0 bokeh-2.4.2 certifi-2021.10.8 cffi-1.15.0 cftime-1.5.1.1 charset-normalizer-2.0.8 colorcet-2.0.6 cycler-0.11.0 debugpy-1.5.1 decorator-5.1.0 defusedxml-0.7.1 entrypoints-0.3 et-xmlfile-1.1.0 fonttools-4.28.2 frozenlist-1.2.0 holoviews-1.14.6 hvplot-0.7.3 idna-3.3 imageio-2.12.0 importlib-metadata-4.8.2 importlib-resources-5.4.0 ipykernel-6.5.1 ipython-7.29.0 ipython-genutils-0.2.0 jedi-0.18.1 jinja2-3.0.3 joblib-1.1.0 jsonschema-4.2.1 jupyter-client-7.1.0 jupyter-core-4.9.1 jupyterlab-pygments-0.1.2 kiwisolver-1.3.2 llvmlite-0.37.0 markdown-3.3.6 matplotlib-3.5.0 matplotlib-inline-0.1.3 meshio-4.4.6 mistune-0.8.4 mne-0.24.0 multidict-5.2.0 nbclient-0.5.9 nbconvert-6.3.0 nbformat-5.1.3 nest-asyncio-1.5.1 netCDF4-1.5.8 nibabel-3.2.1 nilearn-0.8.1 notebook-6.4.6 numba-0.54.1 numpy-1.20.3 openpyxl-3.0.9 pandas-1.3.4 pandocfilters-1.5.0 panel-0.12.5 param-1.12.0 parso-0.8.2 pexpect-4.8.0 pickleshare-0.7.5 pillow-8.4.0 pooch-1.5.2 prometheus-client-0.12.0 prompt-toolkit-3.0.22 ptyprocess-0.7.0 pycparser-2.21 pyct-0.4.8 pygments-2.10.0 pyqt5-5.15.6 pyrsistent-0.18.0 python-dateutil-2.8.2 pytz-2021.3 pyvista-0.32.1 pyvistaqt-0.5.0 pyviz-comms-2.1.0 pyyaml-6.0 pyzmq-22.3.0 requests-2.26.0 scikit-learn-1.0.1 scipy-1.7.3 scooby-0.5.9 setuptools-scm-6.3.2 six-1.16.0 terminado-0.12.1 testpath-0.5.0 threadpoolctl-3.0.0 tornado-6.1 tqdm-4.62.3 traitlets-5.1.1 urllib3-1.26.7 vtk-9.1.0 wcwidth-0.2.5 webencodings-0.5.1 wslink-1.1.1 xarray-0.20.1 yarl-1.7.2
2021-11-26T16:54:06.5042295Z flake8 4.0.1 requires importlib-metadata<4.3; python_version < "3.8", but you have importlib-metadata 4.8.2 which is incompatible.
2021-11-26T16:54:07.1078192Z ##[group]Run # stop the build if there are Python syntax errors or undefined names
2021-11-26T16:54:07.1079212Z �[36;1m# stop the build if there are Python syntax errors or undefined names�[0m
2021-11-26T16:54:07.1080132Z �[36;1mflake8 . --count --select=E9,F63,F7,F82 --show-source --statistics�[0m
2021-11-26T16:54:07.1081055Z �[36;1m# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide�[0m
2021-11-26T16:54:07.1082078Z �[36;1mflake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics�[0m
2021-11-26T16:54:07.1134764Z shell: /usr/bin/bash -e {0}
2021-11-26T16:54:07.1135220Z env:
2021-11-26T16:54:07.1135840Z pythonLocation: /opt/hostedtoolcache/Python/3.7.12/x64
2021-11-26T16:54:07.1136751Z LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.7.12/x64/lib
2021-11-26T16:54:07.1137336Z ##[endgroup]
2021-11-26T16:54:08.9502674Z 0
2021-11-26T16:54:10.1600540Z 0
2021-11-26T16:54:10.1884083Z ##[group]Run pytest -ra -s -vvv --cov=megspikes --cov-report=xml
2021-11-26T16:54:10.1886033Z �[36;1mpytest -ra -s -vvv --cov=megspikes --cov-report=xml�[0m
2021-11-26T16:54:10.1949793Z shell: /usr/bin/bash -e {0}
2021-11-26T16:54:10.1950222Z env:
2021-11-26T16:54:10.1950910Z pythonLocation: /opt/hostedtoolcache/Python/3.7.12/x64
2021-11-26T16:54:10.1951783Z LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.7.12/x64/lib
2021-11-26T16:54:10.1952409Z ##[endgroup]
2021-11-26T16:54:10.7404692Z ============================= test session starts ==============================
2021-11-26T16:54:10.7406486Z platform linux -- Python 3.7.12, pytest-6.2.5, py-1.11.0, pluggy-1.0.0 -- /opt/hostedtoolcache/Python/3.7.12/x64/bin/python
2021-11-26T16:54:10.7407410Z cachedir: .pytest_cache
2021-11-26T16:54:10.7408162Z rootdir: /home/runner/work/megspikes/megspikes, configfile: pytest.ini
2021-11-26T16:54:10.7409038Z plugins: cov-3.0.0
2021-11-26T16:54:26.7530322Z collecting ... collected 110 items
2021-11-26T16:54:26.7531398Z
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2021-11-26T16:55:01.1362497Z 66%|████████████████████████▍ | 1.09G/1.65G [00:33<00:16, 34.0MB/s]
2021-11-26T16:55:01.2820186Z 66%|████████████████████████▌ | 1.10G/1.65G [00:33<00:16, 33.3MB/s]
2021-11-26T16:55:01.3820931Z 67%|████████████████████████▌ | 1.10G/1.65G [00:33<00:18, 29.4MB/s]
2021-11-26T16:55:01.4821112Z 67%|████████████████████████▋ | 1.10G/1.65G [00:33<00:18, 30.3MB/s]
2021-11-26T16:55:01.5820938Z 67%|████████████████████████▊ | 1.11G/1.65G [00:33<00:17, 31.3MB/s]
2021-11-26T16:55:01.6820797Z 67%|████████████████████████▊ | 1.11G/1.65G [00:33<00:16, 32.0MB/s]
2021-11-26T16:55:01.7821189Z 67%|████████████████████████▉ | 1.11G/1.65G [00:33<00:16, 32.5MB/s]
2021-11-26T16:55:01.8820778Z 68%|████████████████████████▉ | 1.12G/1.65G [00:33<00:16, 32.9MB/s]
2021-11-26T16:55:01.9822148Z 68%|█████████████████████████ | 1.12G/1.65G [00:33<00:16, 33.3MB/s]
2021-11-26T16:55:02.0822474Z 68%|█████████████████████████▏ | 1.12G/1.65G [00:34<00:15, 33.5MB/s]
2021-11-26T16:55:02.1822657Z 68%|█████████████████████████▏ | 1.13G/1.65G [00:34<00:15, 33.6MB/s]
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2021-11-26T16:55:02.4823790Z 69%|█████████████████████████▍ | 1.14G/1.65G [00:34<00:15, 33.9MB/s]
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2021-11-26T16:55:02.7824569Z 69%|█████████████████████████▋ | 1.15G/1.65G [00:34<00:14, 34.0MB/s]
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2021-11-26T16:55:03.0827565Z 70%|█████████████████████████▉ | 1.16G/1.65G [00:35<00:14, 34.0MB/s]
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2021-11-26T16:55:03.3828430Z 71%|██████████████████████████▏ | 1.17G/1.65G [00:35<00:14, 34.1MB/s]
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2021-11-26T16:55:03.6834882Z 71%|██████████████████████████▎ | 1.18G/1.65G [00:35<00:13, 34.1MB/s]
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2021-11-26T16:55:03.9843428Z 72%|██████████████████████████▌ | 1.19G/1.65G [00:35<00:13, 34.0MB/s]
2021-11-26T16:55:04.0842287Z 72%|██████████████████████████▋ | 1.19G/1.65G [00:36<00:13, 34.0MB/s]
2021-11-26T16:55:04.1843542Z 72%|██████████████████████████▋ | 1.19G/1.65G [00:36<00:13, 34.1MB/s]
2021-11-26T16:55:04.2845836Z 72%|██████████████████████████▊ | 1.20G/1.65G [00:36<00:13, 34.1MB/s]
2021-11-26T16:55:04.3842734Z 73%|██████████████████████████▉ | 1.20G/1.65G [00:36<00:13, 34.1MB/s]
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2021-11-26T16:55:04.5843720Z 73%|███████████████████████████ | 1.21G/1.65G [00:36<00:12, 34.2MB/s]
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2021-11-26T16:55:04.7856269Z 74%|███████████████████████████▏ | 1.21G/1.65G [00:36<00:12, 34.2MB/s]
2021-11-26T16:55:04.8856431Z 74%|███████████████████████████▎ | 1.22G/1.65G [00:36<00:12, 34.1MB/s]
2021-11-26T16:55:04.9862961Z 74%|███████████████████████████▎ | 1.22G/1.65G [00:36<00:12, 34.2MB/s]
2021-11-26T16:55:05.0866370Z 74%|███████████████████████████▍ | 1.23G/1.65G [00:37<00:12, 34.1MB/s]
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2021-11-26T16:55:05.2872936Z 75%|███████████████████████████▌ | 1.23G/1.65G [00:37<00:12, 34.0MB/s]
2021-11-26T16:55:05.3872487Z 75%|███████████████████████████▋ | 1.24G/1.65G [00:37<00:12, 34.0MB/s]
2021-11-26T16:55:05.4873576Z 75%|███████████████████████████▋ | 1.24G/1.65G [00:37<00:12, 34.1MB/s]
2021-11-26T16:55:05.5876353Z 75%|███████████████████████████▊ | 1.24G/1.65G [00:37<00:12, 34.1MB/s]
2021-11-26T16:55:05.6876479Z 75%|███████████████████████████▉ | 1.25G/1.65G [00:37<00:11, 34.1MB/s]
2021-11-26T16:55:05.7878866Z 76%|███████████████████████████▉ | 1.25G/1.65G [00:37<00:11, 34.1MB/s]
2021-11-26T16:55:05.8885383Z 76%|████████████████████████████ | 1.25G/1.65G [00:37<00:11, 34.1MB/s]
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2021-11-26T16:55:06.2888472Z 77%|████████████████████████████▎ | 1.27G/1.65G [00:38<00:11, 34.0MB/s]
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2021-11-26T16:55:06.6652351Z 77%|████████████████████████████▌ | 1.28G/1.65G [00:38<00:12, 29.3MB/s]
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2021-11-26T16:55:06.8652531Z 78%|████████████████████████████▋ | 1.28G/1.65G [00:38<00:11, 31.4MB/s]
2021-11-26T16:55:06.9652942Z 78%|████████████████████████████▊ | 1.29G/1.65G [00:38<00:11, 32.1MB/s]
2021-11-26T16:55:07.0653297Z 78%|████████████████████████████▉ | 1.29G/1.65G [00:39<00:11, 32.6MB/s]
2021-11-26T16:55:07.1653596Z 78%|████████████████████████████▉ | 1.29G/1.65G [00:39<00:10, 33.1MB/s]
2021-11-26T16:55:07.2653547Z 78%|█████████████████████████████ | 1.30G/1.65G [00:39<00:10, 33.3MB/s]
2021-11-26T16:55:07.3653286Z 79%|█████████████████████████████ | 1.30G/1.65G [00:39<00:10, 33.4MB/s]
2021-11-26T16:55:07.4653736Z 79%|█████████████████████████████▏ | 1.30G/1.65G [00:39<00:10, 33.6MB/s]
2021-11-26T16:55:07.5654019Z 79%|█████████████████████████████▎ | 1.31G/1.65G [00:39<00:10, 33.7MB/s]
2021-11-26T16:55:07.6654162Z 79%|█████████████████████████████▎ | 1.31G/1.65G [00:39<00:10, 33.8MB/s]
2021-11-26T16:55:07.7661598Z 79%|█████████████████████████████▍ | 1.31G/1.65G [00:39<00:10, 33.8MB/s]
2021-11-26T16:55:07.8654100Z 80%|█████████████████████████████▍ | 1.32G/1.65G [00:39<00:09, 33.9MB/s]
2021-11-26T16:55:07.9656743Z 80%|█████████████████████████████▌ | 1.32G/1.65G [00:39<00:09, 34.0MB/s]
2021-11-26T16:55:08.0660386Z 80%|█████████████████████████████▋ | 1.32G/1.65G [00:40<00:09, 34.0MB/s]
2021-11-26T16:55:08.1659828Z 80%|█████████████████████████████▋ | 1.33G/1.65G [00:40<00:09, 33.9MB/s]
2021-11-26T16:55:08.2660656Z 81%|█████████████████████████████▊ | 1.33G/1.65G [00:40<00:09, 33.9MB/s]
2021-11-26T16:55:08.3660639Z 81%|█████████████████████████████▊ | 1.33G/1.65G [00:40<00:09, 34.0MB/s]
2021-11-26T16:55:08.4661651Z 81%|█████████████████████████████▉ | 1.34G/1.65G [00:40<00:09, 34.0MB/s]
2021-11-26T16:55:08.5661007Z 81%|██████████████████████████████ | 1.34G/1.65G [00:40<00:09, 34.1MB/s]
2021-11-26T16:55:08.6660928Z 81%|██████████████████████████████ | 1.34G/1.65G [00:40<00:09, 34.1MB/s]
2021-11-26T16:55:08.7663762Z 82%|██████████████████████████████▏ | 1.35G/1.65G [00:40<00:08, 34.1MB/s]
2021-11-26T16:55:08.8664049Z 82%|██████████████████████████████▏ | 1.35G/1.65G [00:40<00:08, 34.1MB/s]
2021-11-26T16:55:08.9664905Z 82%|██████████████████████████████▎ | 1.35G/1.65G [00:40<00:08, 34.1MB/s]
2021-11-26T16:55:09.0667748Z 82%|██████████████████████████████▍ | 1.36G/1.65G [00:41<00:08, 34.1MB/s]
2021-11-26T16:55:09.1673484Z 82%|██████████████████████████████▍ | 1.36G/1.65G [00:41<00:08, 34.1MB/s]
2021-11-26T16:55:09.2673039Z 83%|██████████████████████████████▌ | 1.36G/1.65G [00:41<00:08, 34.0MB/s]
2021-11-26T16:55:09.3672756Z 83%|██████████████████████████████▋ | 1.37G/1.65G [00:41<00:08, 34.0MB/s]
2021-11-26T16:55:09.4673366Z 83%|██████████████████████████████▋ | 1.37G/1.65G [00:41<00:08, 34.1MB/s]
2021-11-26T16:55:09.5674123Z 83%|██████████████████████████████▊ | 1.38G/1.65G [00:41<00:08, 34.1MB/s]
2021-11-26T16:55:09.6674817Z 83%|██████████████████████████████▊ | 1.38G/1.65G [00:41<00:08, 34.1MB/s]
2021-11-26T16:55:09.7674894Z 84%|██████████████████████████████▉ | 1.38G/1.65G [00:41<00:07, 34.2MB/s]
2021-11-26T16:55:09.8676160Z 84%|███████████████████████████████ | 1.39G/1.65G [00:41<00:07, 34.2MB/s]
2021-11-26T16:55:09.9677976Z 84%|███████████████████████████████ | 1.39G/1.65G [00:41<00:07, 34.1MB/s]
2021-11-26T16:55:10.0677645Z 84%|███████████████████████████████▏ | 1.39G/1.65G [00:42<00:07, 34.2MB/s]
2021-11-26T16:55:10.1685366Z 84%|███████████████████████████████▏ | 1.40G/1.65G [00:42<00:07, 34.2MB/s]
2021-11-26T16:55:10.2685104Z 85%|███████████████████████████████▎ | 1.40G/1.65G [00:42<00:07, 34.2MB/s]
2021-11-26T16:55:10.3691887Z 85%|███████████████████████████████▍ | 1.40G/1.65G [00:42<00:07, 34.2MB/s]
2021-11-26T16:55:10.4692140Z 85%|███████████████████████████████▍ | 1.41G/1.65G [00:42<00:07, 34.1MB/s]
2021-11-26T16:55:10.5696782Z 85%|███████████████████████████████▌ | 1.41G/1.65G [00:42<00:07, 34.2MB/s]
2021-11-26T16:55:10.6705811Z 85%|███████████████████████████████▋ | 1.41G/1.65G [00:42<00:07, 34.2MB/s]
2021-11-26T16:55:10.7711404Z 86%|███████████████████████████████▋ | 1.42G/1.65G [00:42<00:06, 34.1MB/s]
2021-11-26T16:55:10.8712462Z 86%|███████████████████████████████▊ | 1.42G/1.65G [00:42<00:06, 34.0MB/s]
2021-11-26T16:55:10.9718964Z 86%|███████████████████████████████▊ | 1.42G/1.65G [00:42<00:06, 34.0MB/s]
2021-11-26T16:55:11.0720195Z 86%|███████████████████████████████▉ | 1.43G/1.65G [00:43<00:06, 34.0MB/s]
2021-11-26T16:55:11.1721158Z 87%|████████████████████████████████ | 1.43G/1.65G [00:43<00:06, 34.0MB/s]
2021-11-26T16:55:11.2719660Z 87%|████████████████████████████████ | 1.43G/1.65G [00:43<00:06, 34.0MB/s]
2021-11-26T16:55:11.3721118Z 87%|████████████████████████████████▏ | 1.44G/1.65G [00:43<00:06, 34.1MB/s]
2021-11-26T16:55:11.4721084Z 87%|████████████████████████████████▏ | 1.44G/1.65G [00:43<00:06, 34.1MB/s]
2021-11-26T16:55:11.5721674Z 87%|████████████████████████████████▎ | 1.44G/1.65G [00:43<00:06, 34.1MB/s]
2021-11-26T16:55:11.6722265Z 88%|████████████████████████████████▍ | 1.45G/1.65G [00:43<00:06, 34.1MB/s]
2021-11-26T16:55:11.7721664Z 88%|████████████████████████████████▍ | 1.45G/1.65G [00:43<00:05, 34.2MB/s]
2021-11-26T16:55:11.8730603Z 88%|████████████████████████████████▌ | 1.45G/1.65G [00:43<00:05, 34.2MB/s]
2021-11-26T16:55:11.9735137Z 88%|████████████████████████████████▌ | 1.46G/1.65G [00:43<00:05, 34.1MB/s]
2021-11-26T16:55:12.0735527Z 88%|████████████████████████████████▋ | 1.46G/1.65G [00:44<00:05, 34.1MB/s]
2021-11-26T16:55:12.1743797Z 89%|████████████████████████████████▊ | 1.46G/1.65G [00:44<00:05, 34.1MB/s]
2021-11-26T16:55:12.2751527Z 89%|████████████████████████████████▊ | 1.47G/1.65G [00:44<00:05, 34.0MB/s]
2021-11-26T16:55:12.3752124Z 89%|████████████████████████████████▉ | 1.47G/1.65G [00:44<00:05, 34.0MB/s]
2021-11-26T16:55:12.4753803Z 89%|█████████████████████████████████ | 1.47G/1.65G [00:44<00:05, 34.0MB/s]
2021-11-26T16:55:12.5913234Z 89%|█████████████████████████████████ | 1.48G/1.65G [00:44<00:05, 34.0MB/s]
2021-11-26T16:55:12.7278444Z 90%|█████████████████████████████████▏ | 1.48G/1.65G [00:44<00:05, 32.4MB/s]
2021-11-26T16:55:12.8278197Z 90%|█████████████████████████████████▏ | 1.48G/1.65G [00:44<00:05, 29.3MB/s]
2021-11-26T16:55:12.9279524Z 90%|█████████████████████████████████▎ | 1.49G/1.65G [00:44<00:05, 30.6MB/s]
2021-11-26T16:55:13.0280828Z 90%|█████████████████████████████████▍ | 1.49G/1.65G [00:44<00:05, 31.5MB/s]
2021-11-26T16:55:13.1281802Z 90%|█████████████████████████████████▍ | 1.49G/1.65G [00:45<00:04, 32.2MB/s]
2021-11-26T16:55:13.2281184Z 91%|█████████████████████████████████▌ | 1.50G/1.65G [00:45<00:04, 32.7MB/s]
2021-11-26T16:55:13.3281991Z 91%|█████████████████████████████████▌ | 1.50G/1.65G [00:45<00:04, 33.0MB/s]
2021-11-26T16:55:13.4281662Z 91%|█████████████████████████████████▋ | 1.50G/1.65G [00:45<00:04, 33.3MB/s]
2021-11-26T16:55:13.5281361Z 91%|█████████████████████████████████▊ | 1.51G/1.65G [00:45<00:04, 33.4MB/s]
2021-11-26T16:55:13.6282225Z 91%|█████████████████████████████████▊ | 1.51G/1.65G [00:45<00:04, 33.6MB/s]
2021-11-26T16:55:13.7280087Z 92%|█████████████████████████████████▉ | 1.51G/1.65G [00:45<00:04, 33.7MB/s]
2021-11-26T16:55:13.8280049Z 92%|█████████████████████████████████▉ | 1.52G/1.65G [00:45<00:03, 33.8MB/s]
2021-11-26T16:55:13.9282110Z 92%|██████████████████████████████████ | 1.52G/1.65G [00:45<00:03, 33.8MB/s]
2021-11-26T16:55:14.0282142Z 92%|██████████████████████████████████▏ | 1.52G/1.65G [00:45<00:03, 33.9MB/s]
2021-11-26T16:55:14.1283127Z 92%|██████████████████████████████████▏ | 1.53G/1.65G [00:46<00:03, 34.0MB/s]
2021-11-26T16:55:14.2291604Z 93%|██████████████████████████████████▎ | 1.53G/1.65G [00:46<00:03, 34.0MB/s]
2021-11-26T16:55:14.3292901Z 93%|██████████████████████████████████▎ | 1.54G/1.65G [00:46<00:03, 33.9MB/s]
2021-11-26T16:55:14.4292490Z 93%|██████████████████████████████████▍ | 1.54G/1.65G [00:46<00:03, 33.9MB/s]
2021-11-26T16:55:14.5293326Z 93%|██████████████████████████████████▌ | 1.54G/1.65G [00:46<00:03, 33.9MB/s]
2021-11-26T16:55:14.6301801Z 94%|██████████████████████████████████▌ | 1.55G/1.65G [00:46<00:03, 34.0MB/s]
2021-11-26T16:55:14.7301969Z 94%|██████████████████████████████████▋ | 1.55G/1.65G [00:46<00:03, 33.9MB/s]
2021-11-26T16:55:14.8302480Z 94%|██████████████████████████████████▋ | 1.55G/1.65G [00:46<00:02, 33.9MB/s]
2021-11-26T16:55:14.9302173Z 94%|██████████████████████████████████▊ | 1.56G/1.65G [00:46<00:02, 34.0MB/s]
2021-11-26T16:55:15.0303280Z 94%|██████████████████████████████████▉ | 1.56G/1.65G [00:46<00:02, 34.0MB/s]
2021-11-26T16:55:15.1306959Z 95%|██████████████████████████████████▉ | 1.56G/1.65G [00:47<00:02, 34.0MB/s]
2021-11-26T16:55:15.2307277Z 95%|███████████████████████████████████ | 1.57G/1.65G [00:47<00:02, 33.9MB/s]
2021-11-26T16:55:15.3308060Z 95%|███████████████████████████████████▏ | 1.57G/1.65G [00:47<00:02, 34.0MB/s]
2021-11-26T16:55:15.4307517Z 95%|███████████████████████████████████▏ | 1.57G/1.65G [00:47<00:02, 34.1MB/s]
2021-11-26T16:55:15.5307529Z 95%|███████████████████████████████████▎ | 1.58G/1.65G [00:47<00:02, 34.1MB/s]
2021-11-26T16:55:15.6311747Z 96%|███████████████████████████████████▎ | 1.58G/1.65G [00:47<00:02, 34.2MB/s]
2021-11-26T16:55:15.7311725Z 96%|███████████████████████████████████▍ | 1.58G/1.65G [00:47<00:02, 34.1MB/s]
2021-11-26T16:55:15.8313984Z 96%|███████████████████████████████████▌ | 1.59G/1.65G [00:47<00:01, 34.1MB/s]
2021-11-26T16:55:15.9316851Z 96%|███████████████████████████████████▌ | 1.59G/1.65G [00:47<00:01, 34.1MB/s]
2021-11-26T16:55:16.0314872Z 96%|███████████████████████████████████▋ | 1.59G/1.65G [00:47<00:01, 34.1MB/s]
2021-11-26T16:55:16.1314675Z 97%|███████████████████████████████████▋ | 1.60G/1.65G [00:48<00:01, 34.2MB/s]
2021-11-26T16:55:16.2314375Z 97%|███████████████████████████████████▊ | 1.60G/1.65G [00:48<00:01, 34.2MB/s]
2021-11-26T16:55:16.3321145Z 97%|███████████████████████████████████▉ | 1.60G/1.65G [00:48<00:01, 34.2MB/s]
2021-11-26T16:55:16.4323515Z 97%|███████████████████████████████████▉ | 1.61G/1.65G [00:48<00:01, 34.1MB/s]
2021-11-26T16:55:16.5326226Z 97%|████████████████████████████████████ | 1.61G/1.65G [00:48<00:01, 34.1MB/s]
2021-11-26T16:55:16.6330329Z 98%|████████████████████████████████████ | 1.61G/1.65G [00:48<00:01, 34.1MB/s]
2021-11-26T16:55:16.7330641Z 98%|████████████████████████████████████▏| 1.62G/1.65G [00:48<00:01, 34.1MB/s]
2021-11-26T16:55:17.1293832Z 98%|████████████████████████████████████▎| 1.62G/1.65G [00:48<00:00, 34.1MB/s]
2021-11-26T16:55:17.2292540Z 98%|████████████████████████████████████▎| 1.62G/1.65G [00:49<00:01, 18.1MB/s]
2021-11-26T16:55:17.3293026Z 98%|████████████████████████████████████▍| 1.63G/1.65G [00:49<00:01, 20.7MB/s]
2021-11-26T16:55:17.4293838Z 99%|████████████████████████████████████▍| 1.63G/1.65G [00:49<00:00, 23.2MB/s]
2021-11-26T16:55:17.5295059Z 99%|████████████████████████████████████▌| 1.63G/1.65G [00:49<00:00, 25.7MB/s]
2021-11-26T16:55:17.6295249Z 99%|████████████████████████████████████▋| 1.64G/1.65G [00:49<00:00, 27.7MB/s]
2021-11-26T16:55:17.7295789Z 99%|████████████████████████████████████▋| 1.64G/1.65G [00:49<00:00, 29.3MB/s]
2021-11-26T16:55:17.8296161Z 99%|████████████████████████████████████▊| 1.64G/1.65G [00:49<00:00, 30.5MB/s]
2021-11-26T16:55:17.9295250Z 100%|████████████████████████████████████▉| 1.65G/1.65G [00:49<00:00, 31.5MB/s]
2021-11-26T16:55:17.9926746Z 100%|████████████████████████████████████▉| 1.65G/1.65G [00:49<00:00, 32.1MB/s]
2021-11-26T16:55:17.9927460Z 0%| | 0.00/1.65G [00:00<?, ?B/s]
2021-11-26T16:57:01.9772845Z megspikes/casemanager/tests/test_casemanager.py::test_new_case PASSED
2021-11-26T16:57:02.0131445Z megspikes/database/tests/test_database.py::test_make_datasets PASSED
2021-11-26T16:57:48.3254144Z megspikes/database/tests/test_database.py::test_database PASSED
2021-11-26T16:57:48.3893721Z megspikes/database/tests/test_database.py::test_prepare_clusters_dataset PASSED
2021-11-26T16:57:48.4535799Z megspikes/database/tests/test_database.py::test_prepare_aspire_alphacsc_dataset[1.0-2-5-3] PASSED
2021-11-26T16:57:48.5181473Z megspikes/database/tests/test_database.py::test_prepare_aspire_alphacsc_dataset[0.5-2-5-3] PASSED
2021-11-26T16:57:48.5817116Z megspikes/database/tests/test_database.py::test_prepare_aspire_alphacsc_dataset[2.0-1-5-1] PASSED
2021-11-26T16:57:48.6569915Z megspikes/database/tests/test_database.py::test_prepare_aspire_alphacsc_dataset[0.1-1-20-5] PASSED
2021-11-26T16:58:35.0534751Z megspikes/detection/tests/test_detection.py::test_ica_decomposition[grad] PASSED
2021-11-26T16:58:35.4442880Z megspikes/detection/tests/test_detection.py::test_ica_decomposition[mag] PASSED
2021-11-26T16:58:35.4562529Z megspikes/detection/tests/test_detection.py::test_components_selection[gof0-kurtosis0-sel_comp0-0-grad] PASSED
2021-11-26T16:58:35.4675450Z megspikes/detection/tests/test_detection.py::test_components_selection[gof0-kurtosis0-sel_comp0-0-mag] PASSED
2021-11-26T16:58:35.4788601Z megspikes/detection/tests/test_detection.py::test_components_selection[gof1-kurtosis1-sel_comp1-1-grad] PASSED
2021-11-26T16:58:35.4902265Z megspikes/detection/tests/test_detection.py::test_components_selection[gof1-kurtosis1-sel_comp1-1-mag] PASSED
2021-11-26T16:58:35.4919803Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[4-0-1] PASSED
2021-11-26T16:58:35.4935840Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[4-0-2] PASSED
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2021-11-26T16:58:35.5886370Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[4-2-3] PASSED
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2021-11-26T16:58:35.6511149Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[4-2-4] PASSED
2021-11-26T16:58:35.6823078Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[4-3-4] PASSED
2021-11-26T16:58:35.6841856Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[10-0-1] PASSED
2021-11-26T16:58:35.6858024Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[10-0-2] PASSED
2021-11-26T16:58:35.6920424Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[10-1-2] PASSED
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2021-11-26T16:58:35.7291077Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[10-2-4] PASSED
2021-11-26T16:58:35.7417397Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[10-3-4] PASSED
2021-11-26T16:58:35.7434219Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[20-0-1] PASSED
2021-11-26T16:58:35.7450722Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[20-0-2] PASSED
2021-11-26T16:58:35.7513881Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[20-1-2] PASSED
2021-11-26T16:58:35.7618312Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[20-2-3] PASSED
2021-11-26T16:58:35.7634764Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[20-0-4] PASSED
2021-11-26T16:58:35.7798003Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[20-1-4] PASSED
2021-11-26T16:58:35.7920714Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[20-2-4] PASSED
2021-11-26T16:58:35.8045372Z megspikes/detection/tests/test_detection.py::test_components_selection_detailed[20-3-4] PASSED
2021-11-26T16:58:35.8351759Z megspikes/detection/tests/test_detection.py::test_peaks_detection PASSED
2021-11-26T16:58:36.2284494Z megspikes/detection/tests/test_detection.py::test_peaks_detection_details[1.0-1] FAILED
2021-11-26T16:58:36.2468672Z megspikes/detection/tests/test_detection.py::test_peaks_detection_details[1.0-2] FAILED
2021-11-26T16:58:36.2637030Z megspikes/detection/tests/test_detection.py::test_peaks_detection_details[1.0-4] FAILED
2021-11-26T16:58:36.2802018Z megspikes/detection/tests/test_detection.py::test_peaks_detection_details[1.0-7.0] FAILED
2021-11-26T16:58:36.2964743Z megspikes/detection/tests/test_detection.py::test_peaks_detection_details[5-1] FAILED
2021-11-26T16:58:36.3127174Z megspikes/detection/tests/test_detection.py::test_peaks_detection_details[5-2] FAILED
2021-11-26T16:58:36.3290248Z megspikes/detection/tests/test_detection.py::test_peaks_detection_details[5-4] FAILED
2021-11-26T16:58:36.3452820Z megspikes/detection/tests/test_detection.py::test_peaks_detection_details[5-7.0] FAILED
2021-11-26T16:58:36.3613901Z megspikes/detection/tests/test_detection.py::test_peaks_detection_details[10.0-1] FAILED
2021-11-26T16:58:36.3776564Z megspikes/detection/tests/test_detection.py::test_peaks_detection_details[10.0-2] FAILED
2021-11-26T16:58:36.3936901Z megspikes/detection/tests/test_detection.py::test_peaks_detection_details[10.0-4] FAILED
2021-11-26T16:58:36.4095630Z megspikes/detection/tests/test_detection.py::test_peaks_detection_details[10.0-7.0] FAILED
2021-11-26T16:58:36.4107637Z megspikes/detection/tests/test_detection.py::test_ica_peaks_detection PASSED
2021-11-26T16:58:36.4129423Z megspikes/detection/tests/test_detection.py::test_detection_cleaning_details[times0-subcorr0-selection0-3-0.5] PASSED
2021-11-26T16:58:36.4148988Z megspikes/detection/tests/test_detection.py::test_detection_cleaning_details[times1-subcorr1-selection1-4-0.5] PASSED
2021-11-26T16:58:36.4167822Z megspikes/detection/tests/test_detection.py::test_detection_cleaning_details[times2-subcorr2-selection2-10-4] PASSED
2021-11-26T16:58:36.4423630Z megspikes/detection/tests/test_detection.py::test_ica_peaks_detection_cleaning PASSED
2021-11-26T16:58:38.7606281Z megspikes/detection/tests/test_detection.py::test_alphacsc_decomposition[grad] [GreedyCDL] Converged after 8 iteration, (dz, du) = 2.401e-05, 9.208e-06
2021-11-26T16:58:38.7612375Z PASSED
2021-11-26T16:58:40.2454898Z megspikes/detection/tests/test_detection.py::test_alphacsc_decomposition[mag] [GreedyCDL] Converged after 5 iteration, (dz, du) = 7.735e-05, 4.899e-05
2021-11-26T16:58:40.2459795Z PASSED
2021-11-26T16:58:40.8314515Z megspikes/detection/tests/test_detection.py::test_alphacsc_events_selection[grad] PASSED
2021-11-26T16:58:41.2041588Z megspikes/detection/tests/test_detection.py::test_alphacsc_events_selection[mag] PASSED
2021-11-26T16:58:41.2065117Z megspikes/detection/tests/test_detection.py::test_alphacsc_events_selection_details[z_hat0-ica_peaks0-0] PASSED
2021-11-26T16:58:41.2085643Z megspikes/detection/tests/test_detection.py::test_alphacsc_events_selection_details[z_hat1-ica_peaks1-1] PASSED
2021-11-26T16:58:41.2450469Z megspikes/detection/tests/test_detection.py::test_atoms_selection PASSED
2021-11-26T16:59:27.2730425Z megspikes/localization/tests/test_localization.py::test_forward_model_setup[mag-oct5-102-1884] PASSED
2021-11-26T16:59:27.4104529Z megspikes/localization/tests/test_localization.py::test_forward_model_setup[grad-oct5-204-1884] PASSED
2021-11-26T16:59:27.9682576Z megspikes/localization/tests/test_localization.py::test_forward_model_setup[mag-ico5-102-18840] PASSED
2021-11-26T16:59:28.6169048Z megspikes/localization/tests/test_localization.py::test_forward_model_setup[grad-ico5-204-18840] PASSED
2021-11-26T16:59:28.6967323Z megspikes/localization/tests/test_localization.py::test_forward_model_setup[True-oct5-306-1884] PASSED
2021-11-26T16:59:28.7765040Z megspikes/localization/tests/test_localization.py::test_forward_model_setup[True-ico5-306-18840] PASSED
2021-11-26T17:00:05.0404258Z megspikes/localization/tests/test_localization.py::test_components_localization PASSED
2021-11-26T17:00:08.3564779Z megspikes/localization/tests/test_localization.py::test_fast_rap_music XFAIL
2021-11-26T17:00:19.1392160Z megspikes/localization/tests/test_localization.py::test_fast_rap_music_details XFAIL
2021-11-26T17:00:37.9598046Z megspikes/localization/tests/test_localization.py::test_clusters_localization PASSED
2021-11-26T17:00:37.9648158Z megspikes/scoring/tests/test_scoring.py::test_distance_to_resection[resection0-detection0-1] PASSED
2021-11-26T17:00:37.9650306Z megspikes/scoring/tests/test_scoring.py::test_distance_to_resection[resection1-detection1-1] PASSED
2021-11-26T17:00:37.9708395Z megspikes/scoring/tests/test_scoring.py::test_distance_to_resection[resection2-detection2-0] PASSED
2021-11-26T17:00:37.9711340Z megspikes/scoring/tests/test_scoring.py::test_distance_to_resection[resection3-detection3-0] PASSED
2021-11-26T17:00:37.9714087Z megspikes/scoring/tests/test_scoring.py::test_distance_to_resection[resection4-detection4--5] PASSED
2021-11-26T17:00:37.9728755Z megspikes/scoring/tests/test_scoring.py::test_distance_to_resection[resection5-detection5--4] PASSED
2021-11-26T17:00:37.9749281Z megspikes/scoring/tests/test_scoring.py::test_distance_to_resection[resection6-detection6--4] PASSED
2021-11-26T17:01:23.9304028Z megspikes/simulation/tests/test_simulation.py::test_simulation PASSED
2021-11-26T17:01:23.9334194Z megspikes/simulation/tests/test_simulation.py::test_events_simulation[n_events0-simultaneous0-events0] PASSED
2021-11-26T17:01:23.9359772Z megspikes/simulation/tests/test_simulation.py::test_events_simulation[n_events1-simultaneous1-events1] PASSED
2021-11-26T17:01:23.9383524Z megspikes/simulation/tests/test_simulation.py::test_events_simulation[n_events2-simultaneous2-events2] PASSED
2021-11-26T17:01:23.9409489Z megspikes/simulation/tests/test_simulation.py::test_events_simulation[n_events3-simultaneous3-events3] PASSED
2021-11-26T17:01:24.3781946Z megspikes/simulation/tests/test_simulation.py::test_source_simulation[events0] PASSED
2021-11-26T17:01:24.8156740Z megspikes/simulation/tests/test_simulation.py::test_source_simulation[events1] PASSED
2021-11-26T17:03:10.5084717Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline [GreedyCDL] Converged after 4 iteration, (dz, du) = 5.688e-05, 8.712e-05
2021-11-26T17:03:10.5087020Z [GreedyCDL] Converged after 4 iteration, (dz, du) = 5.688e-05, 8.712e-05
2021-11-26T17:03:10.5088558Z [GreedyCDL] Converged after 10 iteration, (dz, du) = 7.140e-05, 7.290e-05
2021-11-26T17:03:10.5090149Z [GreedyCDL] Converged after 10 iteration, (dz, du) = 7.140e-05, 7.290e-05
2021-11-26T17:03:10.5111869Z PASSED
2021-11-26T17:03:22.6802565Z megspikes/tests/test_pipeline.py::test_iz_prediction_pipeline PASSED
2021-11-26T17:03:34.9764961Z megspikes/tests/test_pipeline.py::test_read_results_iz_prediction_pipeline PASSED
2021-11-26T17:03:34.9873768Z megspikes/tests/test_pipeline.py::test_update_default_params PASSED
2021-11-26T17:04:21.8772823Z megspikes/tests/test_utils.py::test_prepare_data[1000.0-filtering0-None-True] PASSED
2021-11-26T17:04:22.3644414Z megspikes/tests/test_utils.py::test_prepare_data[1000.0-filtering0-None-grad] PASSED
2021-11-26T17:04:22.6319785Z megspikes/tests/test_utils.py::test_prepare_data[1000.0-filtering0-None-mag] PASSED
2021-11-26T17:04:23.6251353Z megspikes/tests/test_utils.py::test_prepare_data[200.0-filtering1-12-True] PASSED
2021-11-26T17:04:24.3061435Z megspikes/tests/test_utils.py::test_prepare_data[200.0-filtering1-12-grad] PASSED
2021-11-26T17:04:24.6772671Z megspikes/tests/test_utils.py::test_prepare_data[200.0-filtering1-12-mag] PASSED
2021-11-26T17:04:25.3846285Z megspikes/tests/test_utils.py::test_prepare_data_transformer[1000.0-filtering0-None-True] PASSED
2021-11-26T17:04:25.8713255Z megspikes/tests/test_utils.py::test_prepare_data_transformer[1000.0-filtering0-None-grad] PASSED
2021-11-26T17:04:26.1400157Z megspikes/tests/test_utils.py::test_prepare_data_transformer[1000.0-filtering0-None-mag] PASSED
2021-11-26T17:04:27.5480159Z megspikes/tests/test_utils.py::test_prepare_data_transformer[200.0-filtering1-12-True] PASSED
2021-11-26T17:04:27.8146774Z megspikes/tests/test_utils.py::test_prepare_data_transformer[200.0-filtering1-12-grad] PASSED
2021-11-26T17:04:28.1871220Z megspikes/tests/test_utils.py::test_prepare_data_transformer[200.0-filtering1-12-mag] PASSED
2021-11-26T17:04:28.2170893Z megspikes/tests/test_utils.py::test_prepare_data_transformer[None-None-None-True] PASSED
2021-11-26T17:04:28.2438181Z megspikes/tests/test_utils.py::test_prepare_data_transformer[None-None-None-grad] PASSED
2021-11-26T17:04:28.2666232Z megspikes/tests/test_utils.py::test_prepare_data_transformer[None-None-None-mag] PASSED
2021-11-26T17:04:28.5190313Z megspikes/tests/test_utils.py::test_snr_estimation PASSED
2021-11-26T17:04:28.7837426Z megspikes/tests/test_utils.py::test_labels_to_mni PASSED
2021-11-26T17:05:18.9219559Z megspikes/visualization/tests/test_visualization.py::test_detections_viewer PASSED
2021-11-26T17:05:20.6820897Z megspikes/visualization/tests/test_visualization.py::test_cluster_slope_viewer PASSED
2021-11-26T17:05:20.6822464Z
2021-11-26T17:05:20.6823330Z =================================== FAILURES ===================================
2021-11-26T17:05:20.6825138Z _____________________ test_peaks_detection_details[1.0-1] ______________________
2021-11-26T17:05:20.6825940Z
2021-11-26T17:05:20.6827108Z spikes = array([[ 4.44089210e-18, -1.56280785e-04, -2.71164800e-04, ...,
2021-11-26T17:05:20.6828555Z 1.80577577e-04, 1.98549402e-04, 1.33851849e... [ 3.55271368e-17, 1.27923636e-05, 1.93491824e-05, ...,
2021-11-26T17:05:20.6831232Z -2.59315165e-05, -2.45977892e-05, -1.43925329e-05]])
2021-11-26T17:05:20.6833425Z prominence = 1, width = 1.0
2021-11-26T17:05:20.6835269Z
2021-11-26T17:05:20.6837868Z @pytest.mark.parametrize('prominence', [1, 2, 4, 7.])
2021-11-26T17:05:20.6839448Z @pytest.mark.parametrize('width', [1., 5, 10.])
2021-11-26T17:05:20.6840647Z def test_peaks_detection_details(spikes, prominence, width):
2021-11-26T17:05:20.6841546Z sfreq = 10_000
2021-11-26T17:05:20.6842376Z peak_detection = PeakDetection(
2021-11-26T17:05:20.6843427Z prominence=prominence, width=width, sfreq=sfreq)
2021-11-26T17:05:20.6844296Z true_peaks = []
2021-11-26T17:05:20.6845020Z for spike in spikes:
2021-11-26T17:05:20.6845784Z data = np.zeros(sfreq*3)
2021-11-26T17:05:20.6847216Z data[sfreq:sfreq+500] = spike
2021-11-26T17:05:20.6848329Z (detected_peaks, _) = peak_detection._find_peaks(data)
2021-11-26T17:05:20.6849595Z detected_peaks -= sfreq
2021-11-26T17:05:20.6850502Z true_peaks.append(np.argmax(spike))
2021-11-26T17:05:20.6851419Z > assert len(detected_peaks) > 0
2021-11-26T17:05:20.6852184Z E assert 0 > 0
2021-11-26T17:05:20.6852931Z E + where 0 = len(array([], dtype=int64))
2021-11-26T17:05:20.6853520Z
2021-11-26T17:05:20.6854464Z megspikes/detection/tests/test_detection.py:116: AssertionError
2021-11-26T17:05:20.6855929Z 100%|█████████████████████████████████████| 1.65G/1.65G [00:00<00:00, 2.72TB/s]
2021-11-26T17:05:20.6857571Z _____________________ test_peaks_detection_details[1.0-2] ______________________
2021-11-26T17:05:20.6858242Z
2021-11-26T17:05:20.6859243Z spikes = array([[ 4.44089210e-18, -1.56280785e-04, -2.71164800e-04, ...,
2021-11-26T17:05:20.6860504Z 1.80577577e-04, 1.98549402e-04, 1.33851849e... [ 3.55271368e-17, 1.27923636e-05, 1.93491824e-05, ...,
2021-11-26T17:05:20.6861945Z -2.59315165e-05, -2.45977892e-05, -1.43925329e-05]])
2021-11-26T17:05:20.6862596Z prominence = 2, width = 1.0
2021-11-26T17:05:20.6863077Z
2021-11-26T17:05:20.6865198Z @pytest.mark.parametrize('prominence', [1, 2, 4, 7.])
2021-11-26T17:05:20.6869416Z @pytest.mark.parametrize('width', [1., 5, 10.])
2021-11-26T17:05:20.6870302Z def test_peaks_detection_details(spikes, prominence, width):
2021-11-26T17:05:20.6870943Z sfreq = 10_000
2021-11-26T17:05:20.6871513Z peak_detection = PeakDetection(
2021-11-26T17:05:20.6872277Z prominence=prominence, width=width, sfreq=sfreq)
2021-11-26T17:05:20.6872897Z true_peaks = []
2021-11-26T17:05:20.6873387Z for spike in spikes:
2021-11-26T17:05:20.6873894Z data = np.zeros(sfreq*3)
2021-11-26T17:05:20.6874465Z data[sfreq:sfreq+500] = spike
2021-11-26T17:05:20.6875166Z (detected_peaks, _) = peak_detection._find_peaks(data)
2021-11-26T17:05:20.6876133Z detected_peaks -= sfreq
2021-11-26T17:05:20.6876890Z true_peaks.append(np.argmax(spike))
2021-11-26T17:05:20.6877532Z > assert len(detected_peaks) > 0
2021-11-26T17:05:20.6878027Z E assert 0 > 0
2021-11-26T17:05:20.6878729Z E + where 0 = len(array([], dtype=int64))
2021-11-26T17:05:20.6879111Z
2021-11-26T17:05:20.6879758Z megspikes/detection/tests/test_detection.py:116: AssertionError
2021-11-26T17:05:20.6880830Z _____________________ test_peaks_detection_details[1.0-4] ______________________
2021-11-26T17:05:20.6881257Z
2021-11-26T17:05:20.6882965Z spikes = array([[ 4.44089210e-18, -1.56280785e-04, -2.71164800e-04, ...,
2021-11-26T17:05:20.6884467Z 1.80577577e-04, 1.98549402e-04, 1.33851849e... [ 3.55271368e-17, 1.27923636e-05, 1.93491824e-05, ...,
2021-11-26T17:05:20.6885289Z -2.59315165e-05, -2.45977892e-05, -1.43925329e-05]])
2021-11-26T17:05:20.6885828Z prominence = 4, width = 1.0
2021-11-26T17:05:20.6886149Z
2021-11-26T17:05:20.6886975Z @pytest.mark.parametrize('prominence', [1, 2, 4, 7.])
2021-11-26T17:05:20.6888023Z @pytest.mark.parametrize('width', [1., 5, 10.])
2021-11-26T17:05:20.6888871Z def test_peaks_detection_details(spikes, prominence, width):
2021-11-26T17:05:20.6889532Z sfreq = 10_000
2021-11-26T17:05:20.6890125Z peak_detection = PeakDetection(
2021-11-26T17:05:20.6890871Z prominence=prominence, width=width, sfreq=sfreq)
2021-11-26T17:05:20.6891508Z true_peaks = []
2021-11-26T17:05:20.6892001Z for spike in spikes:
2021-11-26T17:05:20.6892510Z data = np.zeros(sfreq*3)
2021-11-26T17:05:20.6893089Z data[sfreq:sfreq+500] = spike
2021-11-26T17:05:20.6893792Z (detected_peaks, _) = peak_detection._find_peaks(data)
2021-11-26T17:05:20.6894633Z detected_peaks -= sfreq
2021-11-26T17:05:20.6895279Z true_peaks.append(np.argmax(spike))
2021-11-26T17:05:20.6895905Z > assert len(detected_peaks) > 0
2021-11-26T17:05:20.6896423Z E assert 0 > 0
2021-11-26T17:05:20.6896950Z E + where 0 = len(array([], dtype=int64))
2021-11-26T17:05:20.6897321Z
2021-11-26T17:05:20.6897975Z megspikes/detection/tests/test_detection.py:116: AssertionError
2021-11-26T17:05:20.6899034Z ____________________ test_peaks_detection_details[1.0-7.0] _____________________
2021-11-26T17:05:20.6899459Z
2021-11-26T17:05:20.6900132Z spikes = array([[ 4.44089210e-18, -1.56280785e-04, -2.71164800e-04, ...,
2021-11-26T17:05:20.6901037Z 1.80577577e-04, 1.98549402e-04, 1.33851849e... [ 3.55271368e-17, 1.27923636e-05, 1.93491824e-05, ...,
2021-11-26T17:05:20.6902127Z -2.59315165e-05, -2.45977892e-05, -1.43925329e-05]])
2021-11-26T17:05:20.6902641Z prominence = 7.0, width = 1.0
2021-11-26T17:05:20.6902984Z
2021-11-26T17:05:20.6903791Z @pytest.mark.parametrize('prominence', [1, 2, 4, 7.])
2021-11-26T17:05:20.6904827Z @pytest.mark.parametrize('width', [1., 5, 10.])
2021-11-26T17:05:20.6905671Z def test_peaks_detection_details(spikes, prominence, width):
2021-11-26T17:05:20.6906330Z sfreq = 10_000
2021-11-26T17:05:20.6906875Z peak_detection = PeakDetection(
2021-11-26T17:05:20.6907641Z prominence=prominence, width=width, sfreq=sfreq)
2021-11-26T17:05:20.6908275Z true_peaks = []
2021-11-26T17:05:20.6908744Z for spike in spikes:
2021-11-26T17:05:20.6909270Z data = np.zeros(sfreq*3)
2021-11-26T17:05:20.6909840Z data[sfreq:sfreq+500] = spike
2021-11-26T17:05:20.6910517Z (detected_peaks, _) = peak_detection._find_peaks(data)
2021-11-26T17:05:20.6911356Z detected_peaks -= sfreq
2021-11-26T17:05:20.6912001Z true_peaks.append(np.argmax(spike))
2021-11-26T17:05:20.6912624Z > assert len(detected_peaks) > 0
2021-11-26T17:05:20.6913138Z E assert 0 > 0
2021-11-26T17:05:20.6913665Z E + where 0 = len(array([], dtype=int64))
2021-11-26T17:05:20.6914014Z
2021-11-26T17:05:20.6914683Z megspikes/detection/tests/test_detection.py:116: AssertionError
2021-11-26T17:05:20.6915714Z ______________________ test_peaks_detection_details[5-1] _______________________
2021-11-26T17:05:20.6916140Z
2021-11-26T17:05:20.6917908Z spikes = array([[ 4.44089210e-18, -1.56280785e-04, -2.71164800e-04, ...,
2021-11-26T17:05:20.6918956Z 1.80577577e-04, 1.98549402e-04, 1.33851849e... [ 3.55271368e-17, 1.27923636e-05, 1.93491824e-05, ...,
2021-11-26T17:05:20.6919761Z -2.59315165e-05, -2.45977892e-05, -1.43925329e-05]])
2021-11-26T17:05:20.6920267Z prominence = 1, width = 5
2021-11-26T17:05:20.6920612Z
2021-11-26T17:05:20.6921415Z @pytest.mark.parametrize('prominence', [1, 2, 4, 7.])
2021-11-26T17:05:20.6922428Z @pytest.mark.parametrize('width', [1., 5, 10.])
2021-11-26T17:05:20.6923293Z def test_peaks_detection_details(spikes, prominence, width):
2021-11-26T17:05:20.6923945Z sfreq = 10_000
2021-11-26T17:05:20.6924488Z peak_detection = PeakDetection(
2021-11-26T17:05:20.6925250Z prominence=prominence, width=width, sfreq=sfreq)
2021-11-26T17:05:20.6925883Z true_peaks = []
2021-11-26T17:05:20.6926349Z for spike in spikes:
2021-11-26T17:05:20.6926876Z data = np.zeros(sfreq*3)
2021-11-26T17:05:20.6927419Z data[sfreq:sfreq+500] = spike
2021-11-26T17:05:20.6928126Z (detected_peaks, _) = peak_detection._find_peaks(data)
2021-11-26T17:05:20.6928962Z detected_peaks -= sfreq
2021-11-26T17:05:20.6929582Z true_peaks.append(np.argmax(spike))
2021-11-26T17:05:20.6930232Z > assert len(detected_peaks) > 0
2021-11-26T17:05:20.6930754Z E assert 0 > 0
2021-11-26T17:05:20.6931254Z E + where 0 = len(array([], dtype=int64))
2021-11-26T17:05:20.6931623Z
2021-11-26T17:05:20.6932290Z megspikes/detection/tests/test_detection.py:116: AssertionError
2021-11-26T17:05:20.6933461Z ______________________ test_peaks_detection_details[5-2] _______________________
2021-11-26T17:05:20.6933888Z
2021-11-26T17:05:20.6934559Z spikes = array([[ 4.44089210e-18, -1.56280785e-04, -2.71164800e-04, ...,
2021-11-26T17:05:20.6935467Z 1.80577577e-04, 1.98549402e-04, 1.33851849e... [ 3.55271368e-17, 1.27923636e-05, 1.93491824e-05, ...,
2021-11-26T17:05:20.6936246Z -2.59315165e-05, -2.45977892e-05, -1.43925329e-05]])
2021-11-26T17:05:20.6936750Z prominence = 2, width = 5
2021-11-26T17:05:20.6937083Z
2021-11-26T17:05:20.6937888Z @pytest.mark.parametrize('prominence', [1, 2, 4, 7.])
2021-11-26T17:05:20.6938916Z @pytest.mark.parametrize('width', [1., 5, 10.])
2021-11-26T17:05:20.6939882Z def test_peaks_detection_details(spikes, prominence, width):
2021-11-26T17:05:20.6940537Z sfreq = 10_000
2021-11-26T17:05:20.6941102Z peak_detection = PeakDetection(
2021-11-26T17:05:20.6941842Z prominence=prominence, width=width, sfreq=sfreq)
2021-11-26T17:05:20.6942476Z true_peaks = []
2021-11-26T17:05:20.6942939Z for spike in spikes:
2021-11-26T17:05:20.6943469Z data = np.zeros(sfreq*3)
2021-11-26T17:05:20.6944035Z data[sfreq:sfreq+500] = spike
2021-11-26T17:05:20.6944714Z (detected_peaks, _) = peak_detection._find_peaks(data)
2021-11-26T17:05:20.6945571Z detected_peaks -= sfreq
2021-11-26T17:05:20.6946219Z true_peaks.append(np.argmax(spike))
2021-11-26T17:05:20.6946846Z > assert len(detected_peaks) > 0
2021-11-26T17:05:20.6947358Z E assert 0 > 0
2021-11-26T17:05:20.6947878Z E + where 0 = len(array([], dtype=int64))
2021-11-26T17:05:20.6948228Z
2021-11-26T17:05:20.6948904Z megspikes/detection/tests/test_detection.py:116: AssertionError
2021-11-26T17:05:20.6949940Z ______________________ test_peaks_detection_details[5-4] _______________________
2021-11-26T17:05:20.6950365Z
2021-11-26T17:05:20.6951041Z spikes = array([[ 4.44089210e-18, -1.56280785e-04, -2.71164800e-04, ...,
2021-11-26T17:05:20.6951940Z 1.80577577e-04, 1.98549402e-04, 1.33851849e... [ 3.55271368e-17, 1.27923636e-05, 1.93491824e-05, ...,
2021-11-26T17:05:20.6952713Z -2.59315165e-05, -2.45977892e-05, -1.43925329e-05]])
2021-11-26T17:05:20.6953211Z prominence = 4, width = 5
2021-11-26T17:05:20.6953548Z
2021-11-26T17:05:20.6954355Z @pytest.mark.parametrize('prominence', [1, 2, 4, 7.])
2021-11-26T17:05:20.6955457Z @pytest.mark.parametrize('width', [1., 5, 10.])
2021-11-26T17:05:20.6960050Z def test_peaks_detection_details(spikes, prominence, width):
2021-11-26T17:05:20.6960744Z sfreq = 10_000
2021-11-26T17:05:20.6961293Z peak_detection = PeakDetection(
2021-11-26T17:05:20.6963482Z prominence=prominence, width=width, sfreq=sfreq)
2021-11-26T17:05:20.6964136Z true_peaks = []
2021-11-26T17:05:20.6964606Z for spike in spikes:
2021-11-26T17:05:20.6965139Z data = np.zeros(sfreq*3)
2021-11-26T17:05:20.6965715Z data[sfreq:sfreq+500] = spike
2021-11-26T17:05:20.6966390Z (detected_peaks, _) = peak_detection._find_peaks(data)
2021-11-26T17:05:20.6967402Z detected_peaks -= sfreq
2021-11-26T17:05:20.6968026Z true_peaks.append(np.argmax(spike))
2021-11-26T17:05:20.6968678Z > assert len(detected_peaks) > 0
2021-11-26T17:05:20.6969198Z E assert 0 > 0
2021-11-26T17:05:20.6969717Z E + where 0 = len(array([], dtype=int64))
2021-11-26T17:05:20.6970091Z
2021-11-26T17:05:20.6970763Z megspikes/detection/tests/test_detection.py:116: AssertionError
2021-11-26T17:05:20.6971812Z _____________________ test_peaks_detection_details[5-7.0] ______________________
2021-11-26T17:05:20.6972226Z
2021-11-26T17:05:20.6972933Z spikes = array([[ 4.44089210e-18, -1.56280785e-04, -2.71164800e-04, ...,
2021-11-26T17:05:20.6973846Z 1.80577577e-04, 1.98549402e-04, 1.33851849e... [ 3.55271368e-17, 1.27923636e-05, 1.93491824e-05, ...,
2021-11-26T17:05:20.6974607Z -2.59315165e-05, -2.45977892e-05, -1.43925329e-05]])
2021-11-26T17:05:20.6975135Z prominence = 7.0, width = 5
2021-11-26T17:05:20.6975693Z
2021-11-26T17:05:20.6976623Z @pytest.mark.parametrize('prominence', [1, 2, 4, 7.])
2021-11-26T17:05:20.6977598Z @pytest.mark.parametrize('width', [1., 5, 10.])
2021-11-26T17:05:20.6978406Z def test_peaks_detection_details(spikes, prominence, width):
2021-11-26T17:05:20.6979202Z sfreq = 10_000
2021-11-26T17:05:20.6979748Z peak_detection = PeakDetection(
2021-11-26T17:05:20.6980517Z prominence=prominence, width=width, sfreq=sfreq)
2021-11-26T17:05:20.6981149Z true_peaks = []
2021-11-26T17:05:20.6981615Z for spike in spikes:
2021-11-26T17:05:20.6982382Z data = np.zeros(sfreq*3)
2021-11-26T17:05:20.6982929Z data[sfreq:sfreq+500] = spike
2021-11-26T17:05:20.6983633Z (detected_peaks, _) = peak_detection._find_peaks(data)
2021-11-26T17:05:20.6984501Z detected_peaks -= sfreq
2021-11-26T17:05:20.6985124Z true_peaks.append(np.argmax(spike))
2021-11-26T17:05:20.6985773Z > assert len(detected_peaks) > 0
2021-11-26T17:05:20.6986289Z E assert 0 > 0
2021-11-26T17:05:20.6986795Z E + where 0 = len(array([], dtype=int64))
2021-11-26T17:05:20.6987166Z
2021-11-26T17:05:20.6987840Z megspikes/detection/tests/test_detection.py:116: AssertionError
2021-11-26T17:05:20.6988863Z _____________________ test_peaks_detection_details[10.0-1] _____________________
2021-11-26T17:05:20.6989290Z
2021-11-26T17:05:20.6989985Z spikes = array([[ 4.44089210e-18, -1.56280785e-04, -2.71164800e-04, ...,
2021-11-26T17:05:20.6990885Z 1.80577577e-04, 1.98549402e-04, 1.33851849e... [ 3.55271368e-17, 1.27923636e-05, 1.93491824e-05, ...,
2021-11-26T17:05:20.6991649Z -2.59315165e-05, -2.45977892e-05, -1.43925329e-05]])
2021-11-26T17:05:20.6992178Z prominence = 1, width = 10.0
2021-11-26T17:05:20.6992513Z
2021-11-26T17:05:20.6993295Z @pytest.mark.parametrize('prominence', [1, 2, 4, 7.])
2021-11-26T17:05:20.6994329Z @pytest.mark.parametrize('width', [1., 5, 10.])
2021-11-26T17:05:20.6995193Z def test_peaks_detection_details(spikes, prominence, width):
2021-11-26T17:05:20.6995826Z sfreq = 10_000
2021-11-26T17:05:20.6999114Z peak_detection = PeakDetection(
2021-11-26T17:05:20.7000051Z prominence=prominence, width=width, sfreq=sfreq)
2021-11-26T17:05:20.7000675Z true_peaks = []
2021-11-26T17:05:20.7001165Z for spike in spikes:
2021-11-26T17:05:20.7001696Z data = np.zeros(sfreq*3)
2021-11-26T17:05:20.7002240Z data[sfreq:sfreq+500] = spike
2021-11-26T17:05:20.7002946Z (detected_peaks, _) = peak_detection._find_peaks(data)
2021-11-26T17:05:20.7003881Z detected_peaks -= sfreq
2021-11-26T17:05:20.7004527Z true_peaks.append(np.argmax(spike))
2021-11-26T17:05:20.7005176Z > assert len(detected_peaks) > 0
2021-11-26T17:05:20.7005678Z E assert 0 > 0
2021-11-26T17:05:20.7006290Z E + where 0 = len(array([], dtype=int64))
2021-11-26T17:05:20.7006638Z
2021-11-26T17:05:20.7007264Z megspikes/detection/tests/test_detection.py:116: AssertionError
2021-11-26T17:05:20.7008216Z _____________________ test_peaks_detection_details[10.0-2] _____________________
2021-11-26T17:05:20.7008606Z
2021-11-26T17:05:20.7009251Z spikes = array([[ 4.44089210e-18, -1.56280785e-04, -2.71164800e-04, ...,
2021-11-26T17:05:20.7010070Z 1.80577577e-04, 1.98549402e-04, 1.33851849e... [ 3.55271368e-17, 1.27923636e-05, 1.93491824e-05, ...,
2021-11-26T17:05:20.7010789Z -2.59315165e-05, -2.45977892e-05, -1.43925329e-05]])
2021-11-26T17:05:20.7011286Z prominence = 2, width = 10.0
2021-11-26T17:05:20.7011596Z
2021-11-26T17:05:20.7012322Z @pytest.mark.parametrize('prominence', [1, 2, 4, 7.])
2021-11-26T17:05:20.7013283Z @pytest.mark.parametrize('width', [1., 5, 10.])
2021-11-26T17:05:20.7014088Z def test_peaks_detection_details(spikes, prominence, width):
2021-11-26T17:05:20.7014673Z sfreq = 10_000
2021-11-26T17:05:20.7015196Z peak_detection = PeakDetection(
2021-11-26T17:05:20.7015883Z prominence=prominence, width=width, sfreq=sfreq)
2021-11-26T17:05:20.7016472Z true_peaks = []
2021-11-26T17:05:20.7016924Z for spike in spikes:
2021-11-26T17:05:20.7017393Z data = np.zeros(sfreq*3)
2021-11-26T17:05:20.7017925Z data[sfreq:sfreq+500] = spike
2021-11-26T17:05:20.7018576Z (detected_peaks, _) = peak_detection._find_peaks(data)
2021-11-26T17:05:20.7019336Z detected_peaks -= sfreq
2021-11-26T17:05:20.7020135Z true_peaks.append(np.argmax(spike))
2021-11-26T17:05:20.7020904Z > assert len(detected_peaks) > 0
2021-11-26T17:05:20.7021398Z E assert 0 > 0
2021-11-26T17:05:20.7021929Z E + where 0 = len(array([], dtype=int64))
2021-11-26T17:05:20.7022299Z
2021-11-26T17:05:20.7022944Z megspikes/detection/tests/test_detection.py:116: AssertionError
2021-11-26T17:05:20.7024005Z _____________________ test_peaks_detection_details[10.0-4] _____________________
2021-11-26T17:05:20.7024427Z
2021-11-26T17:05:20.7025128Z spikes = array([[ 4.44089210e-18, -1.56280785e-04, -2.71164800e-04, ...,
2021-11-26T17:05:20.7026019Z 1.80577577e-04, 1.98549402e-04, 1.33851849e... [ 3.55271368e-17, 1.27923636e-05, 1.93491824e-05, ...,
2021-11-26T17:05:20.7026807Z -2.59315165e-05, -2.45977892e-05, -1.43925329e-05]])
2021-11-26T17:05:20.7027337Z prominence = 4, width = 10.0
2021-11-26T17:05:20.7027654Z
2021-11-26T17:05:20.7028460Z @pytest.mark.parametrize('prominence', [1, 2, 4, 7.])
2021-11-26T17:05:20.7029495Z @pytest.mark.parametrize('width', [1., 5, 10.])
2021-11-26T17:05:20.7030347Z def test_peaks_detection_details(spikes, prominence, width):
2021-11-26T17:05:20.7030997Z sfreq = 10_000
2021-11-26T17:05:20.7031564Z peak_detection = PeakDetection(
2021-11-26T17:05:20.7032301Z prominence=prominence, width=width, sfreq=sfreq)
2021-11-26T17:05:20.7032935Z true_peaks = []
2021-11-26T17:05:20.7033400Z for spike in spikes:
2021-11-26T17:05:20.7033933Z data = np.zeros(sfreq*3)
2021-11-26T17:05:20.7034501Z data[sfreq:sfreq+500] = spike
2021-11-26T17:05:20.7035179Z (detected_peaks, _) = peak_detection._find_peaks(data)
2021-11-26T17:05:20.7036273Z detected_peaks -= sfreq
2021-11-26T17:05:20.7036929Z true_peaks.append(np.argmax(spike))
2021-11-26T17:05:20.7037550Z > assert len(detected_peaks) > 0
2021-11-26T17:05:20.7038068Z E assert 0 > 0
2021-11-26T17:05:20.7038591Z E + where 0 = len(array([], dtype=int64))
2021-11-26T17:05:20.7038969Z
2021-11-26T17:05:20.7039615Z megspikes/detection/tests/test_detection.py:116: AssertionError
2021-11-26T17:05:20.7040678Z ____________________ test_peaks_detection_details[10.0-7.0] ____________________
2021-11-26T17:05:20.7041105Z
2021-11-26T17:05:20.7041774Z spikes = array([[ 4.44089210e-18, -1.56280785e-04, -2.71164800e-04, ...,
2021-11-26T17:05:20.7042675Z 1.80577577e-04, 1.98549402e-04, 1.33851849e... [ 3.55271368e-17, 1.27923636e-05, 1.93491824e-05, ...,
2021-11-26T17:05:20.7043453Z -2.59315165e-05, -2.45977892e-05, -1.43925329e-05]])
2021-11-26T17:05:20.7043962Z prominence = 7.0, width = 10.0
2021-11-26T17:05:20.7044300Z
2021-11-26T17:05:20.7045112Z @pytest.mark.parametrize('prominence', [1, 2, 4, 7.])
2021-11-26T17:05:20.7046119Z @pytest.mark.parametrize('width', [1., 5, 10.])
2021-11-26T17:05:20.7046986Z def test_peaks_detection_details(spikes, prominence, width):
2021-11-26T17:05:20.7047637Z sfreq = 10_000
2021-11-26T17:05:20.7048187Z peak_detection = PeakDetection(
2021-11-26T17:05:20.7048950Z prominence=prominence, width=width, sfreq=sfreq)
2021-11-26T17:05:20.7049577Z true_peaks = []
2021-11-26T17:05:20.7050041Z for spike in spikes:
2021-11-26T17:05:20.7050569Z data = np.zeros(sfreq*3)
2021-11-26T17:05:20.7051131Z data[sfreq:sfreq+500] = spike
2021-11-26T17:05:20.7051811Z (detected_peaks, _) = peak_detection._find_peaks(data)
2021-11-26T17:05:20.7052651Z detected_peaks -= sfreq
2021-11-26T17:05:20.7053292Z true_peaks.append(np.argmax(spike))
2021-11-26T17:05:20.7053917Z > assert len(detected_peaks) > 0
2021-11-26T17:05:20.7054437Z E assert 0 > 0
2021-11-26T17:05:20.7054940Z E + where 0 = len(array([], dtype=int64))
2021-11-26T17:05:20.7055308Z
2021-11-26T17:05:20.7055976Z megspikes/detection/tests/test_detection.py:116: AssertionError
2021-11-26T17:05:20.7056758Z =============================== warnings summary ===============================
2021-11-26T17:05:20.7058070Z ../../../../../opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/alphacsc/utils/compute_constants.py:29
2021-11-26T17:05:20.7060280Z /opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/alphacsc/utils/compute_constants.py:29: NumbaPerformanceWarning: np.dot() is faster on contiguous arrays, called on (array(float64, 1d, A), array(float64, 1d, A))
2021-11-26T17:05:20.7061701Z uv[k, n_channels:])
2021-11-26T17:05:20.7062016Z
2021-11-26T17:05:20.7063610Z ../../../../../opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/alphacsc/utils/compute_constants.py:35
2021-11-26T17:05:20.7065900Z /opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/alphacsc/utils/compute_constants.py:35: NumbaPerformanceWarning: np.dot() is faster on contiguous arrays, called on (array(float64, 2d, A), array(float64, 2d, A))
2021-11-26T17:05:20.7067423Z DtD *= np.dot(u, u.T).reshape(n_atoms, n_atoms, 1)
2021-11-26T17:05:20.7067835Z
2021-11-26T17:05:20.7068830Z ../../../../../opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/nilearn/datasets/__init__.py:96
2021-11-26T17:05:20.7071132Z /opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/nilearn/datasets/__init__.py:96: FutureWarning: Fetchers from the nilearn.datasets module will be updated in version 0.9 to return python strings instead of bytes and Pandas dataframes instead of Numpy arrays.
2021-11-26T17:05:20.7072768Z "Numpy arrays.", FutureWarning)
2021-11-26T17:05:20.7073161Z
2021-11-26T17:05:20.7073785Z megspikes/casemanager/tests/test_casemanager.py: 1 warning
2021-11-26T17:05:20.7074832Z megspikes/database/tests/test_database.py: 1 warning
2021-11-26T17:05:20.7075679Z megspikes/detection/tests/test_detection.py: 1 warning
2021-11-26T17:05:20.7076690Z megspikes/localization/tests/test_localization.py: 1 warning
2021-11-26T17:05:20.7077609Z megspikes/simulation/tests/test_simulation.py: 3 warnings
2021-11-26T17:05:20.7078524Z megspikes/tests/test_pipeline.py: 1 warning
2021-11-26T17:05:20.7079162Z megspikes/tests/test_utils.py: 1 warning
2021-11-26T17:05:20.7079937Z megspikes/visualization/tests/test_visualization.py: 1 warning
2021-11-26T17:05:20.7081709Z /home/runner/work/megspikes/megspikes/megspikes/simulation/simulation.py:189: DeprecationWarning: sfreq cannot be set directly. Please use method inst.resample() instead. This warning will turn into an error after 0.24
2021-11-26T17:05:20.7083231Z info['sfreq'] = 1000 # Hz
2021-11-26T17:05:20.7083539Z
2021-11-26T17:05:20.7084214Z megspikes/casemanager/tests/test_casemanager.py::test_new_case
2021-11-26T17:05:20.7086766Z /home/runner/work/megspikes/megspikes/megspikes/simulation/simulation.py:297: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_casemanager/sample/MEG_data/tsss_mc_artefact_correction/sample_raw_tsss_mc_art_corr.fif) does not conform to MNE naming conventions. All raw files should end with raw.fif, raw_sss.fif, raw_tsss.fif, _meg.fif, _eeg.fif, _ieeg.fif, raw.fif.gz, raw_sss.fif.gz, raw_tsss.fif.gz, _meg.fif.gz, _eeg.fif.gz or _ieeg.fif.gz
2021-11-26T17:05:20.7089172Z simulation.save(str(fraw2), overwrite=True)
2021-11-26T17:05:20.7089630Z
2021-11-26T17:05:20.7090295Z megspikes/casemanager/tests/test_casemanager.py::test_new_case
2021-11-26T17:05:20.7091250Z megspikes/casemanager/tests/test_casemanager.py::test_new_case
2021-11-26T17:05:20.7092134Z megspikes/database/tests/test_database.py::test_database
2021-11-26T17:05:20.7093146Z megspikes/detection/tests/test_detection.py::test_ica_decomposition[grad]
2021-11-26T17:05:20.7094649Z megspikes/localization/tests/test_localization.py::test_forward_model_setup[mag-oct5-102-1884]
2021-11-26T17:05:20.7095649Z megspikes/simulation/tests/test_simulation.py::test_simulation
2021-11-26T17:05:20.7096546Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline
2021-11-26T17:05:20.7098062Z megspikes/tests/test_utils.py::test_prepare_data[1000.0-filtering0-None-True]
2021-11-26T17:05:20.7099286Z megspikes/visualization/tests/test_visualization.py::test_detections_viewer
2021-11-26T17:05:20.7100536Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:152: UserWarning: No tsss fif file
2021-11-26T17:05:20.7101520Z warnings.warn("No tsss fif file")
2021-11-26T17:05:20.7101902Z
2021-11-26T17:05:20.7102539Z megspikes/casemanager/tests/test_casemanager.py::test_new_case
2021-11-26T17:05:20.7103446Z megspikes/database/tests/test_database.py::test_database
2021-11-26T17:05:20.7104402Z megspikes/detection/tests/test_detection.py::test_ica_decomposition[grad]
2021-11-26T17:05:20.7105945Z megspikes/localization/tests/test_localization.py::test_forward_model_setup[mag-oct5-102-1884]
2021-11-26T17:05:20.7107042Z megspikes/simulation/tests/test_simulation.py::test_simulation
2021-11-26T17:05:20.7107986Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline
2021-11-26T17:05:20.7109334Z megspikes/tests/test_utils.py::test_prepare_data[1000.0-filtering0-None-True]
2021-11-26T17:05:20.7110458Z megspikes/visualization/tests/test_visualization.py::test_detections_viewer
2021-11-26T17:05:20.7111784Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:214: UserWarning: Using ico4 instead of ico5 for BEM model
2021-11-26T17:05:20.7113104Z warnings.warn('Using ico4 instead of ico5 for BEM model')
2021-11-26T17:05:20.7113583Z
2021-11-26T17:05:20.7114247Z megspikes/casemanager/tests/test_casemanager.py::test_new_case
2021-11-26T17:05:20.7117174Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_casemanager/sample/forward_model/forward_ico5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7119184Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7119682Z
2021-11-26T17:05:20.7120354Z megspikes/casemanager/tests/test_casemanager.py::test_new_case
2021-11-26T17:05:20.7122924Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_casemanager/sample/forward_model/forward_oct5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7124902Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7125388Z
2021-11-26T17:05:20.7125978Z megspikes/database/tests/test_database.py::test_database
2021-11-26T17:05:20.7128457Z /home/runner/work/megspikes/megspikes/megspikes/simulation/simulation.py:297: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_database/sample/MEG_data/tsss_mc_artefact_correction/sample_raw_tsss_mc_art_corr.fif) does not conform to MNE naming conventions. All raw files should end with raw.fif, raw_sss.fif, raw_tsss.fif, _meg.fif, _eeg.fif, _ieeg.fif, raw.fif.gz, raw_sss.fif.gz, raw_tsss.fif.gz, _meg.fif.gz, _eeg.fif.gz or _ieeg.fif.gz
2021-11-26T17:05:20.7131767Z simulation.save(str(fraw2), overwrite=True)
2021-11-26T17:05:20.7132228Z
2021-11-26T17:05:20.7132857Z megspikes/database/tests/test_database.py::test_database
2021-11-26T17:05:20.7135386Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_database/sample/forward_model/forward_ico5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7137367Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7137855Z
2021-11-26T17:05:20.7138474Z megspikes/database/tests/test_database.py::test_database
2021-11-26T17:05:20.7140920Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_database/sample/forward_model/forward_oct5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7143073Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7143565Z
2021-11-26T17:05:20.7144188Z megspikes/database/tests/test_database.py::test_database
2021-11-26T17:05:20.7146008Z /opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/xarray/backends/plugins.py:102: DeprecationWarning: SelectableGroups dict interface is deprecated. Use select.
2021-11-26T17:05:20.7147459Z entrypoints = entry_points().get("xarray.backends", ())
2021-11-26T17:05:20.7147947Z
2021-11-26T17:05:20.7148652Z megspikes/detection/tests/test_detection.py::test_ica_decomposition[grad]
2021-11-26T17:05:20.7151233Z /home/runner/work/megspikes/megspikes/megspikes/simulation/simulation.py:297: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_detection/sample/MEG_data/tsss_mc_artefact_correction/sample_raw_tsss_mc_art_corr.fif) does not conform to MNE naming conventions. All raw files should end with raw.fif, raw_sss.fif, raw_tsss.fif, _meg.fif, _eeg.fif, _ieeg.fif, raw.fif.gz, raw_sss.fif.gz, raw_tsss.fif.gz, _meg.fif.gz, _eeg.fif.gz or _ieeg.fif.gz
2021-11-26T17:05:20.7153671Z simulation.save(str(fraw2), overwrite=True)
2021-11-26T17:05:20.7154100Z
2021-11-26T17:05:20.7154812Z megspikes/detection/tests/test_detection.py::test_ica_decomposition[grad]
2021-11-26T17:05:20.7157709Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_detection/sample/forward_model/forward_ico5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7159832Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7160316Z
2021-11-26T17:05:20.7161004Z megspikes/detection/tests/test_detection.py::test_ica_decomposition[grad]
2021-11-26T17:05:20.7163601Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_detection/sample/forward_model/forward_oct5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7181397Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7181949Z
2021-11-26T17:05:20.7182699Z megspikes/detection/tests/test_detection.py::test_ica_decomposition[grad]
2021-11-26T17:05:20.7183727Z megspikes/detection/tests/test_detection.py::test_ica_decomposition[mag]
2021-11-26T17:05:20.7184802Z megspikes/detection/tests/test_detection.py::test_alphacsc_decomposition[grad]
2021-11-26T17:05:20.7185910Z megspikes/detection/tests/test_detection.py::test_alphacsc_decomposition[mag]
2021-11-26T17:05:20.7186996Z megspikes/detection/tests/test_detection.py::test_alphacsc_events_selection[grad]
2021-11-26T17:05:20.7188084Z megspikes/detection/tests/test_detection.py::test_alphacsc_events_selection[mag]
2021-11-26T17:05:20.7190595Z /home/runner/work/megspikes/megspikes/megspikes/utils.py:115: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_detection/sample/MEG_data/tsss_mc_artefact_correction/sample_raw_tsss_mc_art_corr.fif) does not conform to MNE naming conventions. All raw files should end with raw.fif, raw_sss.fif, raw_tsss.fif, _meg.fif, _eeg.fif, _ieeg.fif, raw.fif.gz, raw_sss.fif.gz, raw_tsss.fif.gz, _meg.fif.gz, _eeg.fif.gz or _ieeg.fif.gz
2021-11-26T17:05:20.7192954Z data = mne.io.read_raw_fif(self.data_file, preload=True)
2021-11-26T17:05:20.7193428Z
2021-11-26T17:05:20.7194070Z megspikes/detection/tests/test_detection.py::test_peaks_detection
2021-11-26T17:05:20.7195316Z /home/runner/work/megspikes/megspikes/megspikes/database/database.py:749: UserWarning: ica_component_selection values are all the same
2021-11-26T17:05:20.7196800Z f"{da_name} values are all the same")
2021-11-26T17:05:20.7197166Z
2021-11-26T17:05:20.7198616Z megspikes/localization/tests/test_localization.py::test_forward_model_setup[mag-oct5-102-1884]
2021-11-26T17:05:20.7201321Z /home/runner/work/megspikes/megspikes/megspikes/simulation/simulation.py:297: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_localization/sample/MEG_data/tsss_mc_artefact_correction/sample_raw_tsss_mc_art_corr.fif) does not conform to MNE naming conventions. All raw files should end with raw.fif, raw_sss.fif, raw_tsss.fif, _meg.fif, _eeg.fif, _ieeg.fif, raw.fif.gz, raw_sss.fif.gz, raw_tsss.fif.gz, _meg.fif.gz, _eeg.fif.gz or _ieeg.fif.gz
2021-11-26T17:05:20.7203761Z simulation.save(str(fraw2), overwrite=True)
2021-11-26T17:05:20.7204218Z
2021-11-26T17:05:20.7205427Z megspikes/localization/tests/test_localization.py::test_forward_model_setup[mag-oct5-102-1884]
2021-11-26T17:05:20.7208103Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_localization/sample/forward_model/forward_ico5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7210107Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7210591Z
2021-11-26T17:05:20.7211782Z megspikes/localization/tests/test_localization.py::test_forward_model_setup[mag-oct5-102-1884]
2021-11-26T17:05:20.7214578Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_localization/sample/forward_model/forward_oct5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7216578Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7217038Z
2021-11-26T17:05:20.7217830Z megspikes/localization/tests/test_localization.py::test_clusters_localization
2021-11-26T17:05:20.7218854Z megspikes/tests/test_pipeline.py::test_iz_prediction_pipeline
2021-11-26T17:05:20.7219818Z megspikes/tests/test_pipeline.py::test_read_results_iz_prediction_pipeline
2021-11-26T17:05:20.7221662Z /home/runner/work/megspikes/megspikes/megspikes/database/database.py:744: UserWarning: cluster_properties.loc[{'cluster_property': ['selected_for_iz_prediction']}] values are all the same
2021-11-26T17:05:20.7223000Z f"{da_name}.loc[{selection}] values are all the same")
2021-11-26T17:05:20.7223429Z
2021-11-26T17:05:20.7224170Z megspikes/localization/tests/test_localization.py::test_clusters_localization
2021-11-26T17:05:20.7225175Z megspikes/tests/test_pipeline.py::test_iz_prediction_pipeline
2021-11-26T17:05:20.7226151Z megspikes/tests/test_pipeline.py::test_read_results_iz_prediction_pipeline
2021-11-26T17:05:20.7227646Z /home/runner/work/megspikes/megspikes/megspikes/localization/localization.py:689: UserWarning: No clusters selected for IZ prediction.All clusters were selected instead.
2021-11-26T17:05:20.7229210Z warnings.warn('No clusters selected for IZ prediction.'
2021-11-26T17:05:20.7229721Z
2021-11-26T17:05:20.7230371Z megspikes/simulation/tests/test_simulation.py::test_simulation
2021-11-26T17:05:20.7232872Z /home/runner/work/megspikes/megspikes/megspikes/simulation/simulation.py:297: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_simulation/sample/MEG_data/tsss_mc_artefact_correction/sample_raw_tsss_mc_art_corr.fif) does not conform to MNE naming conventions. All raw files should end with raw.fif, raw_sss.fif, raw_tsss.fif, _meg.fif, _eeg.fif, _ieeg.fif, raw.fif.gz, raw_sss.fif.gz, raw_tsss.fif.gz, _meg.fif.gz, _eeg.fif.gz or _ieeg.fif.gz
2021-11-26T17:05:20.7235368Z simulation.save(str(fraw2), overwrite=True)
2021-11-26T17:05:20.7235823Z
2021-11-26T17:05:20.7236632Z megspikes/simulation/tests/test_simulation.py::test_simulation
2021-11-26T17:05:20.7239162Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_simulation/sample/forward_model/forward_ico5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7241392Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7241869Z
2021-11-26T17:05:20.7242503Z megspikes/simulation/tests/test_simulation.py::test_simulation
2021-11-26T17:05:20.7245006Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_simulation/sample/forward_model/forward_oct5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7246980Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7247454Z
2021-11-26T17:05:20.7248075Z megspikes/simulation/tests/test_simulation.py::test_simulation
2021-11-26T17:05:20.7250694Z /home/runner/work/megspikes/megspikes/megspikes/simulation/tests/test_simulation.py:25: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_simulation/sample/MEG_data/tsss_mc_artefact_correction/sample_raw_tsss_mc_art_corr.fif) does not conform to MNE naming conventions. All raw files should end with raw.fif, raw_sss.fif, raw_tsss.fif, _meg.fif, _eeg.fif, _ieeg.fif, raw.fif.gz, raw_sss.fif.gz, raw_tsss.fif.gz, _meg.fif.gz, _eeg.fif.gz or _ieeg.fif.gz
2021-11-26T17:05:20.7253150Z raw_fif = mne.io.read_raw_fif(sim.case_manager.fif_file)
2021-11-26T17:05:20.7253622Z
2021-11-26T17:05:20.7254265Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline
2021-11-26T17:05:20.7256769Z /home/runner/work/megspikes/megspikes/megspikes/simulation/simulation.py:297: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_pipeline/sample/MEG_data/tsss_mc_artefact_correction/sample_raw_tsss_mc_art_corr.fif) does not conform to MNE naming conventions. All raw files should end with raw.fif, raw_sss.fif, raw_tsss.fif, _meg.fif, _eeg.fif, _ieeg.fif, raw.fif.gz, raw_sss.fif.gz, raw_tsss.fif.gz, _meg.fif.gz, _eeg.fif.gz or _ieeg.fif.gz
2021-11-26T17:05:20.7259172Z simulation.save(str(fraw2), overwrite=True)
2021-11-26T17:05:20.7259600Z
2021-11-26T17:05:20.7260245Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline
2021-11-26T17:05:20.7262772Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_pipeline/sample/forward_model/forward_ico5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7264754Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7265231Z
2021-11-26T17:05:20.7266469Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline
2021-11-26T17:05:20.7269077Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_pipeline/sample/forward_model/forward_oct5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7271038Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7271514Z
2021-11-26T17:05:20.7272171Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline
2021-11-26T17:05:20.7273088Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline
2021-11-26T17:05:20.7274022Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline
2021-11-26T17:05:20.7275122Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline
2021-11-26T17:05:20.7276174Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline
2021-11-26T17:05:20.7277130Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline
2021-11-26T17:05:20.7278056Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline
2021-11-26T17:05:20.7278967Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline
2021-11-26T17:05:20.7281391Z /home/runner/work/megspikes/megspikes/megspikes/utils.py:115: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_pipeline/sample/MEG_data/tsss_mc_artefact_correction/sample_raw_tsss_mc_art_corr.fif) does not conform to MNE naming conventions. All raw files should end with raw.fif, raw_sss.fif, raw_tsss.fif, _meg.fif, _eeg.fif, _ieeg.fif, raw.fif.gz, raw_sss.fif.gz, raw_tsss.fif.gz, _meg.fif.gz, _eeg.fif.gz or _ieeg.fif.gz
2021-11-26T17:05:20.7283716Z data = mne.io.read_raw_fif(self.data_file, preload=True)
2021-11-26T17:05:20.7284194Z
2021-11-26T17:05:20.7284842Z megspikes/tests/test_pipeline.py::test_aspire_alphacsc_pipeline
2021-11-26T17:05:20.7286898Z /opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/sklearn/decomposition/_fastica.py:119: ConvergenceWarning: FastICA did not converge. Consider increasing tolerance or the maximum number of iterations.
2021-11-26T17:05:20.7288384Z ConvergenceWarning,
2021-11-26T17:05:20.7288775Z
2021-11-26T17:05:20.7289417Z megspikes/tests/test_pipeline.py::test_iz_prediction_pipeline
2021-11-26T17:05:20.7290369Z megspikes/tests/test_pipeline.py::test_read_results_iz_prediction_pipeline
2021-11-26T17:05:20.7292117Z /home/runner/work/megspikes/megspikes/megspikes/database/database.py:744: UserWarning: spike.loc[{'detection_property': 'cluster'}] values are all the same
2021-11-26T17:05:20.7293311Z f"{da_name}.loc[{selection}] values are all the same")
2021-11-26T17:05:20.7293715Z
2021-11-26T17:05:20.7294363Z megspikes/tests/test_pipeline.py::test_iz_prediction_pipeline
2021-11-26T17:05:20.7295344Z megspikes/tests/test_pipeline.py::test_read_results_iz_prediction_pipeline
2021-11-26T17:05:20.7297108Z /home/runner/work/megspikes/megspikes/megspikes/database/database.py:744: UserWarning: cluster_properties.loc[{'cluster_property': 'sensors'}] values are all the same
2021-11-26T17:05:20.7298261Z f"{da_name}.loc[{selection}] values are all the same")
2021-11-26T17:05:20.7298649Z
2021-11-26T17:05:20.7299244Z megspikes/tests/test_pipeline.py::test_iz_prediction_pipeline
2021-11-26T17:05:20.7300361Z megspikes/tests/test_pipeline.py::test_read_results_iz_prediction_pipeline
2021-11-26T17:05:20.7302057Z /home/runner/work/megspikes/megspikes/megspikes/database/database.py:744: UserWarning: cluster_properties.loc[{'cluster_property': ['cluster_id']}] values are all the same
2021-11-26T17:05:20.7303309Z f"{da_name}.loc[{selection}] values are all the same")
2021-11-26T17:05:20.7303733Z
2021-11-26T17:05:20.7304361Z megspikes/tests/test_pipeline.py::test_iz_prediction_pipeline
2021-11-26T17:05:20.7305328Z megspikes/tests/test_pipeline.py::test_read_results_iz_prediction_pipeline
2021-11-26T17:05:20.7307013Z /home/runner/work/megspikes/megspikes/megspikes/database/database.py:744: UserWarning: cluster_properties.loc[{'cluster_property': ['sensors']}] values are all the same
2021-11-26T17:05:20.7308234Z f"{da_name}.loc[{selection}] values are all the same")
2021-11-26T17:05:20.7308661Z
2021-11-26T17:05:20.7309295Z megspikes/tests/test_pipeline.py::test_iz_prediction_pipeline
2021-11-26T17:05:20.7310251Z megspikes/tests/test_pipeline.py::test_read_results_iz_prediction_pipeline
2021-11-26T17:05:20.7311980Z /home/runner/work/megspikes/megspikes/megspikes/database/database.py:744: UserWarning: cluster_properties.loc[{'cluster_property': ['time_baseline']}] values are all the same
2021-11-26T17:05:20.7313257Z f"{da_name}.loc[{selection}] values are all the same")
2021-11-26T17:05:20.7313773Z
2021-11-26T17:05:20.7314393Z megspikes/tests/test_pipeline.py::test_iz_prediction_pipeline
2021-11-26T17:05:20.7315367Z megspikes/tests/test_pipeline.py::test_read_results_iz_prediction_pipeline
2021-11-26T17:05:20.7317196Z /home/runner/work/megspikes/megspikes/megspikes/database/database.py:744: UserWarning: cluster_properties.loc[{'cluster_property': ['time_slope']}] values are all the same
2021-11-26T17:05:20.7318432Z f"{da_name}.loc[{selection}] values are all the same")
2021-11-26T17:05:20.7318861Z
2021-11-26T17:05:20.7319573Z megspikes/tests/test_pipeline.py::test_iz_prediction_pipeline
2021-11-26T17:05:20.7320455Z megspikes/tests/test_pipeline.py::test_read_results_iz_prediction_pipeline
2021-11-26T17:05:20.7322032Z /home/runner/work/megspikes/megspikes/megspikes/database/database.py:744: UserWarning: cluster_properties.loc[{'cluster_property': ['time_peak']}] values are all the same
2021-11-26T17:05:20.7323184Z f"{da_name}.loc[{selection}] values are all the same")
2021-11-26T17:05:20.7323573Z
2021-11-26T17:05:20.7324143Z megspikes/tests/test_pipeline.py::test_iz_prediction_pipeline
2021-11-26T17:05:20.7325040Z megspikes/tests/test_pipeline.py::test_read_results_iz_prediction_pipeline
2021-11-26T17:05:20.7326530Z /home/runner/work/megspikes/megspikes/megspikes/localization/localization.py:699: RuntimeWarning: invalid value encountered in true_divide
2021-11-26T17:05:20.7327568Z i, ii, :, peak[ii]].max()
2021-11-26T17:05:20.7327873Z
2021-11-26T17:05:20.7328555Z megspikes/tests/test_pipeline.py::test_read_results_iz_prediction_pipeline
2021-11-26T17:05:20.7330459Z /home/runner/work/megspikes/megspikes/megspikes/database/database.py:744: UserWarning: alphacsc_atoms_library_properties.loc[{'atoms_library_property': 'library_cluster'}] values are all the same
2021-11-26T17:05:20.7331869Z f"{da_name}.loc[{selection}] values are all the same")
2021-11-26T17:05:20.7332258Z
2021-11-26T17:05:20.7332897Z megspikes/tests/test_pipeline.py::test_read_results_iz_prediction_pipeline
2021-11-26T17:05:20.7334572Z /home/runner/work/megspikes/megspikes/megspikes/database/database.py:744: UserWarning: alphacsc_atoms_library_properties.loc[{'atoms_library_property': 'library_sensors'}] values are all the same
2021-11-26T17:05:20.7335809Z f"{da_name}.loc[{selection}] values are all the same")
2021-11-26T17:05:20.7336196Z
2021-11-26T17:05:20.7336831Z megspikes/tests/test_pipeline.py::test_read_results_iz_prediction_pipeline
2021-11-26T17:05:20.7338466Z /home/runner/work/megspikes/megspikes/megspikes/database/database.py:744: UserWarning: alphacsc_atoms_library_properties.loc[{'atoms_library_property': 'library_run'}] values are all the same
2021-11-26T17:05:20.7339689Z f"{da_name}.loc[{selection}] values are all the same")
2021-11-26T17:05:20.7340076Z
2021-11-26T17:05:20.7341325Z megspikes/tests/test_utils.py::test_prepare_data[1000.0-filtering0-None-True]
2021-11-26T17:05:20.7343894Z /home/runner/work/megspikes/megspikes/megspikes/simulation/simulation.py:297: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_utils/sample/MEG_data/tsss_mc_artefact_correction/sample_raw_tsss_mc_art_corr.fif) does not conform to MNE naming conventions. All raw files should end with raw.fif, raw_sss.fif, raw_tsss.fif, _meg.fif, _eeg.fif, _ieeg.fif, raw.fif.gz, raw_sss.fif.gz, raw_tsss.fif.gz, _meg.fif.gz, _eeg.fif.gz or _ieeg.fif.gz
2021-11-26T17:05:20.7346270Z simulation.save(str(fraw2), overwrite=True)
2021-11-26T17:05:20.7346720Z
2021-11-26T17:05:20.7347807Z megspikes/tests/test_utils.py::test_prepare_data[1000.0-filtering0-None-True]
2021-11-26T17:05:20.7350353Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_utils/sample/forward_model/forward_ico5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7352276Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7352846Z
2021-11-26T17:05:20.7353938Z megspikes/tests/test_utils.py::test_prepare_data[1000.0-filtering0-None-True]
2021-11-26T17:05:20.7356576Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_utils/sample/forward_model/forward_oct5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7358526Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7358999Z
2021-11-26T17:05:20.7359720Z megspikes/visualization/tests/test_visualization.py::test_detections_viewer
2021-11-26T17:05:20.7362352Z /home/runner/work/megspikes/megspikes/megspikes/simulation/simulation.py:297: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_visualization/sample/MEG_data/tsss_mc_artefact_correction/sample_raw_tsss_mc_art_corr.fif) does not conform to MNE naming conventions. All raw files should end with raw.fif, raw_sss.fif, raw_tsss.fif, _meg.fif, _eeg.fif, _ieeg.fif, raw.fif.gz, raw_sss.fif.gz, raw_tsss.fif.gz, _meg.fif.gz, _eeg.fif.gz or _ieeg.fif.gz
2021-11-26T17:05:20.7364800Z simulation.save(str(fraw2), overwrite=True)
2021-11-26T17:05:20.7365243Z
2021-11-26T17:05:20.7365983Z megspikes/visualization/tests/test_visualization.py::test_detections_viewer
2021-11-26T17:05:20.7370266Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_visualization/sample/forward_model/forward_ico5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7372326Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7372809Z
2021-11-26T17:05:20.7373554Z megspikes/visualization/tests/test_visualization.py::test_detections_viewer
2021-11-26T17:05:20.7376204Z /home/runner/work/megspikes/megspikes/megspikes/casemanager/casemanager.py:232: RuntimeWarning: This filename (/home/runner/work/megspikes/megspikes/tests_data/test_visualization/sample/forward_model/forward_oct5.fif) does not conform to MNE naming conventions. All forward files should end with -fwd.fif, -fwd.fif.gz, _fwd.fif or _fwd.fif.gz
2021-11-26T17:05:20.7378155Z mne.write_forward_solution(fwd_name, fwd, overwrite=True)
2021-11-26T17:05:20.7378635Z
2021-11-26T17:05:20.7379503Z -- Docs: https://docs.pytest.org/en/stable/warnings.html
2021-11-26T17:05:20.7380089Z
2021-11-26T17:05:20.7380860Z ---------- coverage: platform linux, python 3.7.12-final-0 -----------
2021-11-26T17:05:20.7381634Z Coverage XML written to file coverage.xml
2021-11-26T17:05:20.7382055Z
2021-11-26T17:05:20.7382528Z =========================== short test summary info ============================
2021-11-26T17:05:20.7383349Z XFAIL megspikes/localization/tests/test_localization.py::test_fast_rap_music
2021-11-26T17:05:20.7384443Z XFAIL megspikes/localization/tests/test_localization.py::test_fast_rap_music_details
2021-11-26T17:05:20.7386047Z FAILED megspikes/detection/tests/test_detection.py::test_peaks_detection_details[1.0-1]
2021-11-26T17:05:20.7387570Z FAILED megspikes/detection/tests/test_detection.py::test_peaks_detection_details[1.0-2]
2021-11-26T17:05:20.7389042Z FAILED megspikes/detection/tests/test_detection.py::test_peaks_detection_details[1.0-4]
2021-11-26T17:05:20.7390516Z FAILED megspikes/detection/tests/test_detection.py::test_peaks_detection_details[1.0-7.0]
2021-11-26T17:05:20.7391971Z FAILED megspikes/detection/tests/test_detection.py::test_peaks_detection_details[5-1]
2021-11-26T17:05:20.7393445Z FAILED megspikes/detection/tests/test_detection.py::test_peaks_detection_details[5-2]
2021-11-26T17:05:20.7394908Z FAILED megspikes/detection/tests/test_detection.py::test_peaks_detection_details[5-4]
2021-11-26T17:05:20.7396491Z FAILED megspikes/detection/tests/test_detection.py::test_peaks_detection_details[5-7.0]
2021-11-26T17:05:20.7398148Z FAILED megspikes/detection/tests/test_detection.py::test_peaks_detection_details[10.0-1]
2021-11-26T17:05:20.7399683Z FAILED megspikes/detection/tests/test_detection.py::test_peaks_detection_details[10.0-2]
2021-11-26T17:05:20.7401035Z FAILED megspikes/detection/tests/test_detection.py::test_peaks_detection_details[10.0-4]
2021-11-26T17:05:20.7402658Z FAILED megspikes/detection/tests/test_detection.py::test_peaks_detection_details[10.0-7.0]
2021-11-26T17:05:20.7403592Z ====== 12 failed, 96 passed, 2 xfailed, 97 warnings in 669.95s (0:11:09) =======
2021-11-26T17:05:21.6619786Z ##[error]Process completed with exit code 1.
2021-11-26T17:05:21.6744603Z Post job cleanup.
2021-11-26T17:05:21.8136723Z [command]/usr/bin/git version
2021-11-26T17:05:21.8195937Z git version 2.34.0
2021-11-26T17:05:21.8237809Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2021-11-26T17:05:21.8283438Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :
2021-11-26T17:05:21.8598176Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2021-11-26T17:05:21.8627894Z http.https://github.com/.extraheader
2021-11-26T17:05:21.8639227Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader
2021-11-26T17:05:21.8682693Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :
2021-11-26T17:05:21.9041434Z Cleaning up orphan processes
Presumably, behavior of
data = preprocessing.robust_scale(data)is different. #11Tests with error:
Details
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