From 4edef04e916b378bdcbab3e574747120f36d2858 Mon Sep 17 00:00:00 2001 From: Alexander Berger Date: Thu, 9 Oct 2025 10:00:37 -0400 Subject: [PATCH 1/3] Update mouse-tracking-runtime images to v0.1.3 --- nextflow/configs/profiles/sumner2.config | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/nextflow/configs/profiles/sumner2.config b/nextflow/configs/profiles/sumner2.config index 9a24192..4e4920c 100644 --- a/nextflow/configs/profiles/sumner2.config +++ b/nextflow/configs/profiles/sumner2.config @@ -175,7 +175,7 @@ process { * Runtime options */ withLabel: "tracking" { - container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/runtime/v0.1.2/latest.sif" + container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/runtime/v0.1.3/latest.sif" } withLabel: "jabs_classify" { container = "/projects/kumar-lab/meta/images/JABS-behavior-classifier/headless/v0.36.1/latest.sif" @@ -184,7 +184,7 @@ process { container = "/projects/kumar-lab/meta/images/JABS-postprocess/jabs-postprocess/v0.4.0/latest.sif" } withLabel: "jabs_table_convert" { - container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/RBase/v0.1.2/latest.sif" + container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/RBase/v0.1.3/latest.sif" } withLabel: "gait" { container = "/projects/kumar-lab/multimouse-pipeline/nextflow-containers/gait-pipeline-2025-03-27.sif" @@ -193,10 +193,10 @@ process { container = "/projects/kumar-lab/multimouse-pipeline/nextflow-containers/vfi-2025-03-27.sif" } withLabel: "sleap" { - container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/sleap-1.4.1/v0.1.2/latest.sif" + container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/sleap-1.4.1/v0.1.3/latest.sif" } withLabel: "sleap_io" { - container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/sleap-io-0.2.0/v0.1.2/latest.sif" + container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/sleap-io-0.2.0/v0.1.3/latest.sif" } withLabel: "rclone" { // executor.queueSize = 1 From d3d0d9ab8397bb686627e0af6f4903b58c7151c9 Mon Sep 17 00:00:00 2001 From: Alexander Berger Date: Thu, 9 Oct 2025 11:46:04 -0400 Subject: [PATCH 2/3] Bump container version to 0.1.4 --- nextflow/configs/profiles/sumner2.config | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/nextflow/configs/profiles/sumner2.config b/nextflow/configs/profiles/sumner2.config index 4e4920c..e9b6f19 100644 --- a/nextflow/configs/profiles/sumner2.config +++ b/nextflow/configs/profiles/sumner2.config @@ -175,7 +175,7 @@ process { * Runtime options */ withLabel: "tracking" { - container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/runtime/v0.1.3/latest.sif" + container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/runtime/v0.1.4/latest.sif" } withLabel: "jabs_classify" { container = "/projects/kumar-lab/meta/images/JABS-behavior-classifier/headless/v0.36.1/latest.sif" @@ -184,7 +184,7 @@ process { container = "/projects/kumar-lab/meta/images/JABS-postprocess/jabs-postprocess/v0.4.0/latest.sif" } withLabel: "jabs_table_convert" { - container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/RBase/v0.1.3/latest.sif" + container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/RBase/v0.1.4/latest.sif" } withLabel: "gait" { container = "/projects/kumar-lab/multimouse-pipeline/nextflow-containers/gait-pipeline-2025-03-27.sif" @@ -193,10 +193,10 @@ process { container = "/projects/kumar-lab/multimouse-pipeline/nextflow-containers/vfi-2025-03-27.sif" } withLabel: "sleap" { - container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/sleap-1.4.1/v0.1.3/latest.sif" + container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/sleap-1.4.1/v0.1.4/latest.sif" } withLabel: "sleap_io" { - container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/sleap-io-0.2.0/v0.1.3/latest.sif" + container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/sleap-io-0.2.0/v0.1.4/latest.sif" } withLabel: "rclone" { // executor.queueSize = 1 From 6ff04d35d69313b4e7da1262728e4fb5b5368cf0 Mon Sep 17 00:00:00 2001 From: Alexander Berger Date: Thu, 9 Oct 2025 12:25:17 -0400 Subject: [PATCH 3/3] Update rclone container image refernce on sumner2 --- nextflow/configs/profiles/sumner2.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nextflow/configs/profiles/sumner2.config b/nextflow/configs/profiles/sumner2.config index e9b6f19..3b5b6e5 100644 --- a/nextflow/configs/profiles/sumner2.config +++ b/nextflow/configs/profiles/sumner2.config @@ -200,7 +200,7 @@ process { } withLabel: "rclone" { // executor.queueSize = 1 - container = "/projects/kumar-lab/multimouse-pipeline/rclone_2025-08-18.sif" + container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/rclone/v0.1.4/latest.sif" cpus = 1 time = '48h' memory = '12GB'