From 98d0cd6b757070890df4531f81832ef7a3d94fbe Mon Sep 17 00:00:00 2001
From: Alexander Berger <alexander.berger@jax.org>
Date: Wed, 8 Oct 2025 19:53:44 -0400
Subject: [PATCH] Adding support code to docker image, fix heuristic classifier
 path for sumner2, bump version

---
 .dockerignore                            | 1 -
 Dockerfile                               | 4 +++-
 nextflow/configs/profiles/sumner2.config | 4 ++--
 pyproject.toml                           | 2 +-
 uv.lock                                  | 2 +-
 5 files changed, 7 insertions(+), 6 deletions(-)

diff --git a/.dockerignore b/.dockerignore
index e810d9dd..b69fdd97 100644
--- a/.dockerignore
+++ b/.dockerignore
@@ -5,7 +5,6 @@ docs/
 .nf-test
 mouse-tracking-runtime
 nextflow
-support_code
 vm
 *.h5
 *.sh
diff --git a/Dockerfile b/Dockerfile
index c2fb867c..a401f9c5 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -8,7 +8,7 @@ ENV UV_SYSTEM_PYTHON=1 \
     PYTHONUNBUFFERED=1
 
 # Copy metadata first for layer caching
-COPY pyproject.toml uv.lock* README.md ./
+COPY pyproject.toml uv.lock* README.md support_code ./
 
 # Only install runtime dependencies
 RUN uv sync --frozen --no-group dev --no-group test --no-group lint --no-install-project
@@ -18,4 +18,6 @@ COPY src ./src
 
 RUN uv pip install --system .
 
+COPY support_code ./support_code
+
 CMD ["mouse-tracking-runtime", "--help"]
diff --git a/nextflow/configs/profiles/sumner2.config b/nextflow/configs/profiles/sumner2.config
index e6e7804e..9a241922 100644
--- a/nextflow/configs/profiles/sumner2.config
+++ b/nextflow/configs/profiles/sumner2.config
@@ -29,8 +29,8 @@ params {
     tracking_code_dir = "/kumar_lab_models/mouse-tracking-runtime/"
     gait_code_dir = "/gait-analysis/"
     vfi_code_dir = "/vfi/Code/"
-    support_code_dir = "/mouse-tracking-runtime/support_code/"
-    heuristic_classifier_folder = "/JABS-postprocess/heuristic_classifiers/"
+    support_code_dir = "/workspace/support_code/"
+    heuristic_classifier_folder = "/opt/JABS-postprocess/src/jabs_postprocess/heuristic_classifiers/"
     filter_processed = false
 
     jabs_version = "v0.37.0"
diff --git a/pyproject.toml b/pyproject.toml
index a1a7ea4a..a0f0c3b7 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "mouse-tracking"
-version = "0.1.2"
+version = "0.1.3"
 description = "Runtime environment for mouse tracking experiments"
 requires-python = ">=3.10,<3.11"
 packages = ["src/mouse_tracking"]
diff --git a/uv.lock b/uv.lock
index bcf0f812..cebe9af9 100644
--- a/uv.lock
+++ b/uv.lock
@@ -470,7 +470,7 @@ wheels = [
 
 [[package]]
 name = "mouse-tracking"
-version = "0.1.2"
+version = "0.1.3"
 source = { editable = "." }
 dependencies = [
     { name = "absl-py" },