diff --git a/nextflow/modules/jabs_classifiers.nf b/nextflow/modules/jabs_classifiers.nf index 9c4162b..a08ae5f 100644 --- a/nextflow/modules/jabs_classifiers.nf +++ b/nextflow/modules/jabs_classifiers.nf @@ -113,12 +113,13 @@ process GENERATE_BEHAVIOR_TABLES { } ]) """ + echo '${behaviorJson}' > config.json jabs-postprocess generate-tables \ --project-folder . \ --feature-folder . \ --out-prefix ${in_pose.baseName} \ --out-bin-size 5 \ - --behavior-config '${behaviorJson}' + --behavior-config ./config.json """ }