From 571aa5579e6287cb3e64506cfaf2f5fa3f35f29a Mon Sep 17 00:00:00 2001
From: Brian Geuther <Brian.Geuther@jax.org>
Date: Mon, 22 Sep 2025 11:52:48 -0400
Subject: [PATCH] Casting a potential string object to file to access baseName

---
 nextflow/workflows/single_mouse_pipeline.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nextflow/workflows/single_mouse_pipeline.nf b/nextflow/workflows/single_mouse_pipeline.nf
index 26ce03f1..aec558d7 100644
--- a/nextflow/workflows/single_mouse_pipeline.nf
+++ b/nextflow/workflows/single_mouse_pipeline.nf
@@ -124,7 +124,7 @@ workflow SPLIT_BY_CORNERS {
 
     // Publish the pose files
     v6_poses_renamed = v6_with_corners.map { video, pose ->
-        tuple(pose, "results/${video.baseName.replace("%20", "/")}_pose_est_v6.h5")
+        tuple(pose, "results/${file(video).baseName.replace("%20", "/")}_pose_est_v6.h5")
     }
     PUBLISH_SM_POSE_V6(v6_poses_renamed)
     // Corners that failed are placed in a separate folder with url-ified names