From 4741ccfd44b9a1fdd3f5aadbf196dbb0bb752023 Mon Sep 17 00:00:00 2001 From: Brian Geuther Date: Mon, 25 Aug 2025 13:53:00 -0400 Subject: [PATCH 1/2] Setting JABS-behavior-classifier target to 0.34.3 --- nextflow/configs/profiles/sumner2.config | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/nextflow/configs/profiles/sumner2.config b/nextflow/configs/profiles/sumner2.config index e123ad8..a9f4853 100644 --- a/nextflow/configs/profiles/sumner2.config +++ b/nextflow/configs/profiles/sumner2.config @@ -35,7 +35,7 @@ params { support_code_dir = "/mouse-tracking-runtime/support_code/" heuristic_classifier_folder = "/JABS-postprocess/heuristic_classifiers/" - jabs_version = "0.18.1" + jabs_version = "0.34.3" classifier_project_folders = "/projects/kumar-lab/multimouse-pipeline/nextflow-artifacts/project_folders/" classifier_training_file_folder = "/projects/kumar-lab/multimouse-pipeline/nextflow-artifacts/training_files/" exported_classifier_folder = "/projects/kumar-lab/multimouse-pipeline/nextflow-artifacts/exported_classifiers/" @@ -174,7 +174,7 @@ process { container = "/projects/kumar-lab/multimouse-pipeline/deployment-runtime_2025-03-05.sif" } withLabel: "jabs_classify" { - container = "/projects/kumar-lab/multimouse-pipeline/nextflow-containers/JABS-GUI_2025-02-12_v0.18.1.sif" + container = "/projects/kumar-lab/multimouse-pipeline/nextflow-containers/JABS-GUI_2025-08-22_v0.34.3.sif" } withLabel: "jabs_postprocess" { container = "/projects/kumar-lab/multimouse-pipeline/nextflow-containers/JABS-Postprocessing-2025-03-27_864d687.sif" From b862b15ab5745f0b7d319a04d2a2fd126a525e5b Mon Sep 17 00:00:00 2001 From: Brian Geuther Date: Mon, 25 Aug 2025 13:56:48 -0400 Subject: [PATCH 2/2] Adding in Leg_splaying classifier --- nextflow/configs/profiles/sumner2.config | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/nextflow/configs/profiles/sumner2.config b/nextflow/configs/profiles/sumner2.config index a9f4853..b5c15aa 100644 --- a/nextflow/configs/profiles/sumner2.config +++ b/nextflow/configs/profiles/sumner2.config @@ -40,7 +40,7 @@ params { classifier_training_file_folder = "/projects/kumar-lab/multimouse-pipeline/nextflow-artifacts/training_files/" exported_classifier_folder = "/projects/kumar-lab/multimouse-pipeline/nextflow-artifacts/exported_classifiers/" classifier_artifact_suffix = "_classifier_v${jabs_version}.pickle" - classifier_window_sizes = [2, 5, 10, 20, 30, 60] + classifier_window_sizes = [2, 3, 5, 10, 20, 30, 60] // Classifiers are described as behavior_name: project_folder single_mouse_classifiers = [ "grooming": [ @@ -53,11 +53,11 @@ params { "stitch_value": 5, "filter_value": 5, ], - // "Leg_splaying": [ // Currently can't be exported successfully - // "project_folder_name": "ptz", - // "stitch_value": 5, - // "filter_value": 5, - // ], + "Leg_splaying": [ + "project_folder_name": "ptz", + "stitch_value": 5, + "filter_value": 5, + ], "Side_seizure": [ "project_folder_name": "ptz", "stitch_value": 5,