diff --git a/.github/workflows/_build-docker-action.yml b/.github/workflows/_build-docker-action.yml
new file mode 100644
index 0000000..2b2b1a1
--- /dev/null
+++ b/.github/workflows/_build-docker-action.yml
@@ -0,0 +1,50 @@
+name: 'Build Docker Image'
+on:
+  workflow_call:
+env:
+  REGISTRY: docker.io
+  IMAGE_NAME: aberger4/mouse-tracking
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      packages: write
+
+    steps:
+
+    - name: Checkout repository
+      uses: actions/checkout@v4
+
+    - name: Log in to Container Registry
+      if: github.event_name != 'pull_request'
+      uses: docker/login-action@v3
+      with:
+        registry: ${{ env.REGISTRY }}
+        username: aberger4
+        password: ${{ secrets.DOCKER_SECRET }}
+
+    - name: Extract metadata
+      id: meta
+      uses: docker/metadata-action@v5
+      with:
+        images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
+        tags: |
+          type=ref,event=branch
+          type=ref,event=pr
+          type=semver,pattern={{version}}
+          type=semver,pattern={{major}}.{{minor}}
+          type=raw,value=latest,enable={{is_default_branch}}
+
+    - name: Set up Docker Buildx
+      uses: docker/setup-buildx-action@v3
+
+    - name: Build and push Docker image
+      uses: docker/build-push-action@v5
+      with:
+        context: .
+        push: ${{ github.event_name != 'pull_request' }}
+        tags: ${{ steps.meta.outputs.tags }}
+        labels: ${{ steps.meta.outputs.labels }}
+        cache-from: type=gha
+        cache-to: type=gha,mode=max
\ No newline at end of file
diff --git a/.github/workflows/_format-lint-action.yml b/.github/workflows/_format-lint-action.yml
new file mode 100644
index 0000000..7e48258
--- /dev/null
+++ b/.github/workflows/_format-lint-action.yml
@@ -0,0 +1,33 @@
+name: 'Lint Code Definition'
+on:
+  workflow_call:
+    inputs:
+      python-version:
+        description: 'Python version to set up'
+        required: false
+        default: '3.10'
+        type: string
+jobs:
+  format-lint:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ inputs.python-version }}
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v3
+        with:
+          version: "latest"
+
+      - name: Install dependencies with uv
+        run: uv sync --only-group lint
+
+      - name: Run Ruff Linter
+        run: uv run --only-group lint ruff check src/ tests/
+
+      - name: Run Ruff Formatter
+        run: uv run --only-group lint ruff format --check src/ tests/
diff --git a/.github/workflows/_run-tests-action.yml b/.github/workflows/_run-tests-action.yml
new file mode 100644
index 0000000..d56bfe5
--- /dev/null
+++ b/.github/workflows/_run-tests-action.yml
@@ -0,0 +1,38 @@
+name: 'Python Tests Definition'
+on:
+  workflow_call:
+    inputs:
+      python-version:
+        description: Python version to set up'
+        required: false
+        default: '3.10'
+        type: string
+      runner-os:
+        description: 'Runner OS'
+        required: false
+        default: 'ubuntu-latest'
+        type: string
+jobs:
+  run-tests:
+    runs-on: ${{ inputs.runner-os }}
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python ${{ inputs.python-version }}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ inputs.python-version }}
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v3
+        with:
+          version: "latest"
+
+      - name: Install dependencies with uv
+        run: uv sync --extra cpu
+
+      - name: Make Sure PyTorch is Installed
+        run: uv pip install torch==2.6.0 torchvision==0.21.0 torchaudio==2.6.0 --index-url https://download.pytorch.org/whl/cpu
+
+      - name: Test with pytest
+        run: uv run pytest tests
diff --git a/.github/workflows/pull-request.yml b/.github/workflows/pull-request.yml
new file mode 100644
index 0000000..271baf0
--- /dev/null
+++ b/.github/workflows/pull-request.yml
@@ -0,0 +1,20 @@
+name: Pull Request Checks
+
+on:
+  pull_request:
+    branches: [ main, repository-reorganization ]
+
+jobs:
+  format-lint:
+    name: "Format and Lint"
+    uses: ./.github/workflows/_format-lint-action.yml
+
+  test:
+    name: "Run Tests"
+    needs: format-lint
+    uses: ./.github/workflows/_run-tests-action.yml
+
+  build:
+    name: "Build Docker Image"
+    needs: [format-lint, test]
+    uses: ./.github/workflows/_build-docker-action.yml
diff --git a/pyproject.toml b/pyproject.toml
index eb5cd83..6c8ecd1 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -9,7 +9,7 @@ dependencies = [
   "scipy==1.11.4",
   "pandas==2.0.3",
   "opencv-python-headless==4.8.0.76",
-  "imageio==2.31.6",
+  "imageio[ffmpeg]==2.31.6",
   "pillow==9.4.0",
   "matplotlib==3.7.1",
   "typer>=0.12.4",
@@ -40,16 +40,33 @@ cpu = [
 
 
 # ---- uv configuration: point Torch family at cu126 index ----
+# ---- uv indexes ----
+[[tool.uv.index]]
+name = "pypi"
+url  = "https://pypi.org/simple"
+explicit = false
+
 [[tool.uv.index]]
 name = "pytorch-cu126"
 url  = "https://download.pytorch.org/whl/cu126"
 explicit = true
 
+# ---- uv per-package sources with markers ----
+# Use CUDA wheels only when installing the `gpu` extra AND on platforms that can use them.
+# Fall back to CPU wheels when installing the `cpu` extra.
 [tool.uv.sources]
-torch = { index = "pytorch-cu126" }
-torchvision = { index = "pytorch-cu126" }
-torchaudio = { index = "pytorch-cu126" }
-
+torch = [
+  { index = "pytorch-cu126", marker = "sys_platform == 'linux' and extra == 'gpu'" },
+  { index = "pypi", marker = "sys_platform == 'linux' and extra != 'gpu'" },
+]
+torchvision = [
+  { index = "pytorch-cu126", marker = "sys_platform == 'linux' and extra == 'gpu'" },
+  { index = "pypi", marker = "sys_platform == 'linux' and extra != 'gpu'" },
+]
+torchaudio = [
+  { index = "pytorch-cu126", marker = "sys_platform == 'linux' and extra == 'gpu'" },
+  { index = "pypi", marker = "sys_platform == 'linux' and extra != 'gpu'" },
+]
 
 [project.scripts]
 mouse-tracking-runtime = "mouse_tracking.cli.main:app"
@@ -98,8 +115,14 @@ addopts = "--benchmark-skip"
 
 [dependency-groups]
 dev = [
+  {include-group = "lint"},
+  {include-group = "test"}
+]
+test = [
     "pytest>=8.3.5",
     "pytest-benchmark>=5.1.0",
     "pytest-cov>=6.1.1",
+]
+lint = [
     "ruff>=0.11.2",
 ]
diff --git a/tests/cli/infer/test_arena_corner.py b/tests/cli/infer/test_arena_corner.py
index 208d259..6234290 100644
--- a/tests/cli/infer/test_arena_corner.py
+++ b/tests/cli/infer/test_arena_corner.py
@@ -255,7 +255,9 @@ def test_arena_corner_frame_options(self, mock_infer, num_frames, frame_interval
     def test_arena_corner_help_text(self):
         """Test that the command has proper help text."""
         # Arrange & Act
-        result = self.runner.invoke(app, ["arena-corner", "--help"])
+        result = self.runner.invoke(
+            app, ["arena-corner", "--help"], env={"TERM": "dumb"}
+        )
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/infer/test_commands.py b/tests/cli/infer/test_commands.py
index 3d3a024..37976c8 100644
--- a/tests/cli/infer/test_commands.py
+++ b/tests/cli/infer/test_commands.py
@@ -111,7 +111,7 @@ def test_infer_commands_help_structure():
 
     # Act & Assert
     for command in commands:
-        result = runner.invoke(app, [command, "--help"])
+        result = runner.invoke(app, [command, "--help"], env={"TERM": "dumb"})
         assert result.exit_code == 0
         assert "Usage:" in result.stdout
         assert "--help" in result.stdout
@@ -252,7 +252,7 @@ def test_infer_command_help_format(command_name):
     runner = CliRunner()
 
     # Act
-    result = runner.invoke(app, [command_name, "--help"])
+    result = runner.invoke(app, [command_name, "--help"], env={"TERM": "dumb"})
 
     # Assert
     assert result.exit_code == 0
diff --git a/tests/cli/infer/test_fecal_boli.py b/tests/cli/infer/test_fecal_boli.py
index 8816df0..c03c025 100644
--- a/tests/cli/infer/test_fecal_boli.py
+++ b/tests/cli/infer/test_fecal_boli.py
@@ -280,7 +280,7 @@ def test_fecal_boli_default_values(self, mock_infer):
     def test_fecal_boli_help_text(self):
         """Test that the fecal boli command has proper help text."""
         # Arrange & Act
-        result = self.runner.invoke(app, ["fecal-boli", "--help"])
+        result = self.runner.invoke(app, ["fecal-boli", "--help"], env={"TERM": "dumb"})
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/infer/test_food_hopper.py b/tests/cli/infer/test_food_hopper.py
index 99273b1..3a4f84c 100644
--- a/tests/cli/infer/test_food_hopper.py
+++ b/tests/cli/infer/test_food_hopper.py
@@ -278,7 +278,9 @@ def test_food_hopper_default_values(self, mock_infer):
     def test_food_hopper_help_text(self):
         """Test that the food hopper command has proper help text."""
         # Arrange & Act
-        result = self.runner.invoke(app, ["food-hopper", "--help"])
+        result = self.runner.invoke(
+            app, ["food-hopper", "--help"], env={"TERM": "dumb"}
+        )
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/infer/test_lixit.py b/tests/cli/infer/test_lixit.py
index 8901027..d103d21 100644
--- a/tests/cli/infer/test_lixit.py
+++ b/tests/cli/infer/test_lixit.py
@@ -276,7 +276,7 @@ def test_lixit_default_values(self, mock_infer):
     def test_lixit_help_text(self):
         """Test that the lixit command has proper help text."""
         # Arrange & Act
-        result = self.runner.invoke(app, ["lixit", "--help"])
+        result = self.runner.invoke(app, ["lixit", "--help"], env={"TERM": "dumb"})
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/infer/test_multi_identity.py b/tests/cli/infer/test_multi_identity.py
index 420d12e..f3bff2e 100644
--- a/tests/cli/infer/test_multi_identity.py
+++ b/tests/cli/infer/test_multi_identity.py
@@ -204,7 +204,9 @@ def test_multi_identity_default_values(self, mock_infer):
     def test_multi_identity_help_text(self):
         """Test that the multi-identity command has proper help text."""
         # Arrange & Act
-        result = self.runner.invoke(app, ["multi-identity", "--help"])
+        result = self.runner.invoke(
+            app, ["multi-identity", "--help"], env={"TERM": "dumb"}
+        )
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/infer/test_multi_pose.py b/tests/cli/infer/test_multi_pose.py
index ad3688c..d6ecb1f 100644
--- a/tests/cli/infer/test_multi_pose.py
+++ b/tests/cli/infer/test_multi_pose.py
@@ -319,7 +319,7 @@ def test_multi_pose_default_values(self, mock_infer):
     def test_multi_pose_help_text(self):
         """Test that the multi-pose command has proper help text."""
         # Arrange & Act
-        result = self.runner.invoke(app, ["multi-pose", "--help"])
+        result = self.runner.invoke(app, ["multi-pose", "--help"], env={"TERM": "dumb"})
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/infer/test_multi_segmentation.py b/tests/cli/infer/test_multi_segmentation.py
index 1adbf2a..d3fa0de 100644
--- a/tests/cli/infer/test_multi_segmentation.py
+++ b/tests/cli/infer/test_multi_segmentation.py
@@ -244,7 +244,9 @@ def test_multi_segmentation_default_values(self, mock_infer):
     def test_multi_segmentation_help_text(self):
         """Test that the multi-segmentation command has proper help text."""
         # Arrange & Act
-        result = self.runner.invoke(app, ["multi-segmentation", "--help"])
+        result = self.runner.invoke(
+            app, ["multi-segmentation", "--help"], env={"TERM": "dumb"}
+        )
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/infer/test_single_pose.py b/tests/cli/infer/test_single_pose.py
index f43ff78..d9ee596 100644
--- a/tests/cli/infer/test_single_pose.py
+++ b/tests/cli/infer/test_single_pose.py
@@ -294,7 +294,9 @@ def test_single_pose_default_values(self, mock_infer):
     def test_single_pose_help_text(self):
         """Test that the single-pose command has proper help text."""
         # Arrange & Act
-        result = self.runner.invoke(app, ["single-pose", "--help"])
+        result = self.runner.invoke(
+            app, ["single-pose", "--help"], env={"TERM": "dumb"}
+        )
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/infer/test_single_segmentation.py b/tests/cli/infer/test_single_segmentation.py
index 3affb1f..5af205c 100644
--- a/tests/cli/infer/test_single_segmentation.py
+++ b/tests/cli/infer/test_single_segmentation.py
@@ -244,7 +244,9 @@ def test_single_segmentation_default_values(self, mock_infer):
     def test_single_segmentation_help_text(self):
         """Test that the single-segmentation command has proper help text."""
         # Arrange & Act
-        result = self.runner.invoke(app, ["single-segmentation", "--help"])
+        result = self.runner.invoke(
+            app, ["single-segmentation", "--help"], env={"TERM": "dumb"}
+        )
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/qa/test_commands.py b/tests/cli/qa/test_commands.py
index d7ee5df..80c6fea 100644
--- a/tests/cli/qa/test_commands.py
+++ b/tests/cli/qa/test_commands.py
@@ -111,7 +111,11 @@ def test_qa_single_pose_execution_with_mock_file():
         pose_file = Path(tmp_file.name)
 
     # Mock the inspect_pose_v6 function to avoid actual file processing
-    with patch("mouse_tracking.cli.qa.inspect_pose_v6") as mock_inspect:
+    # and mock to_csv to avoid creating real CSV files
+    with (
+        patch("mouse_tracking.cli.qa.inspect_pose_v6") as mock_inspect,
+        patch("pandas.DataFrame.to_csv") as mock_to_csv,
+    ):
         mock_inspect.return_value = {"metric1": 0.5, "metric2": 0.8}
 
         # Act
@@ -120,6 +124,7 @@ def test_qa_single_pose_execution_with_mock_file():
         # Assert
         assert result.exit_code == 0
         mock_inspect.assert_called_once()
+        mock_to_csv.assert_called_once()
 
     # Cleanup
     if pose_file.exists():
@@ -277,7 +282,7 @@ def test_qa_command_help_format(command_name):
     runner = CliRunner()
 
     # Act
-    result = runner.invoke(app, [command_name, "--help"])
+    result = runner.invoke(app, [command_name, "--help"], env={"TERM": "dumb"})
 
     # Assert
     assert result.exit_code == 0
diff --git a/tests/cli/test_integration.py b/tests/cli/test_integration.py
index 361670d..177ed2d 100644
--- a/tests/cli/test_integration.py
+++ b/tests/cli/test_integration.py
@@ -199,7 +199,7 @@ def test_help_command_accessibility():
 
     # Act & Assert
     for path in help_paths:
-        result = runner.invoke(app, path)
+        result = runner.invoke(app, path, env={"TERM": "dumb"})
         assert result.exit_code == 0
         assert "Usage:" in result.stdout
         assert "--help" in result.stdout
@@ -398,7 +398,7 @@ def test_comprehensive_cli_structure():
     runner = CliRunner()
 
     # Act
-    main_help = runner.invoke(app, ["--help"])
+    main_help = runner.invoke(app, ["--help"], env={"TERM": "dumb"})
 
     # Assert - Main structure
     assert main_help.exit_code == 0
@@ -435,25 +435,39 @@ def test_commands_with_proper_arguments():
         tmp_folder = Path(tmp_dir)
 
         try:
-            # Test infer arena-corner with video
-            result = runner.invoke(
-                app, ["infer", "arena-corner", "--video", str(video_path)]
-            )
-            assert result.exit_code == 0
-
-            # Test infer single-pose with proper arguments
-            result = runner.invoke(
-                app,
-                [
-                    "infer",
-                    "single-pose",
-                    "--video",
-                    str(video_path),
-                    "--out-file",
-                    str(out_path),
-                ],
-            )
-            assert result.exit_code == 0
+            # Test infer arena-corner with video (mock the entire inference function)
+            with (
+                patch(
+                    "mouse_tracking.cli.infer.infer_arena_corner_model"
+                ) as mock_arena,
+                patch.object(Path, "exists", return_value=True),
+            ):
+                result = runner.invoke(
+                    app, ["infer", "arena-corner", "--video", str(video_path)]
+                )
+                assert result.exit_code == 0
+                mock_arena.assert_called_once()
+
+            # Test infer single-pose with proper arguments (mock the entire inference function)
+            with (
+                patch(
+                    "mouse_tracking.cli.infer.infer_single_pose_pytorch"
+                ) as mock_pose,
+                patch.object(Path, "exists", return_value=True),
+            ):
+                result = runner.invoke(
+                    app,
+                    [
+                        "infer",
+                        "single-pose",
+                        "--video",
+                        str(video_path),
+                        "--out-file",
+                        str(out_path),
+                    ],
+                )
+                assert result.exit_code == 0
+                mock_pose.assert_called_once()
 
             # Test qa single-pose with proper arguments (mock the inspect function)
             with (
diff --git a/tests/cli/utils/test_aggregate_fecal_boli.py b/tests/cli/utils/test_aggregate_fecal_boli.py
index 927363c..1c0511d 100644
--- a/tests/cli/utils/test_aggregate_fecal_boli.py
+++ b/tests/cli/utils/test_aggregate_fecal_boli.py
@@ -288,7 +288,9 @@ def test_parameter_edge_cases(
     def test_help_message_content(self, runner):
         """Test that help message contains expected content."""
         # Arrange & Act
-        result = runner.invoke(app, ["aggregate-fecal-boli", "--help"])
+        result = runner.invoke(
+            app, ["aggregate-fecal-boli", "--help"], env={"TERM": "dumb"}
+        )
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/utils/test_clip_video_auto.py b/tests/cli/utils/test_clip_video_auto.py
index 8197dc1..0f75d46 100644
--- a/tests/cli/utils/test_clip_video_auto.py
+++ b/tests/cli/utils/test_clip_video_auto.py
@@ -392,7 +392,9 @@ def test_clip_video_auto_exception_handling(
     def test_help_message_content(self, runner):
         """Test that help message contains expected content."""
         # Arrange & Act
-        result = runner.invoke(app, ["clip-video-to-start", "auto", "--help"])
+        result = runner.invoke(
+            app, ["clip-video-to-start", "auto", "--help"], env={"TERM": "dumb"}
+        )
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/utils/test_clip_video_manual.py b/tests/cli/utils/test_clip_video_manual.py
index 8f54371..bd3d576 100644
--- a/tests/cli/utils/test_clip_video_manual.py
+++ b/tests/cli/utils/test_clip_video_manual.py
@@ -420,7 +420,9 @@ def test_clip_video_manual_exception_handling(
     def test_help_message_content(self, runner):
         """Test that help message contains expected content."""
         # Arrange & Act
-        result = runner.invoke(app, ["clip-video-to-start", "manual", "--help"])
+        result = runner.invoke(
+            app, ["clip-video-to-start", "manual", "--help"], env={"TERM": "dumb"}
+        )
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/utils/test_commands.py b/tests/cli/utils/test_commands.py
index 7f97e4e..e9c718b 100644
--- a/tests/cli/utils/test_commands.py
+++ b/tests/cli/utils/test_commands.py
@@ -54,7 +54,7 @@ def test_utils_commands_registered(command_name, expected_docstring_content):
     runner = CliRunner()
 
     # Act
-    result = runner.invoke(app, [command_name, "--help"])
+    result = runner.invoke(app, [command_name, "--help"], env={"TERM": "dumb"})
 
     # Assert
     assert result.exit_code == 0
@@ -216,7 +216,7 @@ def test_utils_command_help_format(command_name):
     runner = CliRunner()
 
     # Act
-    result = runner.invoke(app, [command_name, "--help"])
+    result = runner.invoke(app, [command_name, "--help"], env={"TERM": "dumb"})
 
     # Assert
     assert result.exit_code == 0
diff --git a/tests/cli/utils/test_downgrade_multi_to_single.py b/tests/cli/utils/test_downgrade_multi_to_single.py
index 9b423ce..a6703f2 100644
--- a/tests/cli/utils/test_downgrade_multi_to_single.py
+++ b/tests/cli/utils/test_downgrade_multi_to_single.py
@@ -149,7 +149,9 @@ def test_invalid_pose_file_exception_handling(
     def test_help_message_content(self, runner):
         """Test that help message contains expected content."""
         # Arrange & Act
-        result = runner.invoke(app, ["downgrade-multi-to-single", "--help"])
+        result = runner.invoke(
+            app, ["downgrade-multi-to-single", "--help"], env={"TERM": "dumb"}
+        )
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/utils/test_flip_xy_field.py b/tests/cli/utils/test_flip_xy_field.py
index 8f97d4b..06f9a20 100644
--- a/tests/cli/utils/test_flip_xy_field.py
+++ b/tests/cli/utils/test_flip_xy_field.py
@@ -135,7 +135,7 @@ def test_file_not_found_exception_handling(self, mock_swap, runner):
     def test_help_message_content(self, runner):
         """Test that help message contains expected content."""
         # Arrange & Act
-        result = runner.invoke(app, ["flip-xy-field", "--help"])
+        result = runner.invoke(app, ["flip-xy-field", "--help"], env={"TERM": "dumb"})
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/utils/test_render_pose.py b/tests/cli/utils/test_render_pose.py
index 260fc97..6b73958 100644
--- a/tests/cli/utils/test_render_pose.py
+++ b/tests/cli/utils/test_render_pose.py
@@ -251,7 +251,7 @@ def test_video_processing_exception_handling(
     def test_help_message_content(self, runner):
         """Test that help message contains expected content."""
         # Arrange & Act
-        result = runner.invoke(app, ["render-pose", "--help"])
+        result = runner.invoke(app, ["render-pose", "--help"], env={"TERM": "dumb"})
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/cli/utils/test_stitch_tracklets.py b/tests/cli/utils/test_stitch_tracklets.py
index 96d0c78..9376ac8 100644
--- a/tests/cli/utils/test_stitch_tracklets.py
+++ b/tests/cli/utils/test_stitch_tracklets.py
@@ -97,7 +97,9 @@ def test_file_not_found_exception_handling(self, mock_match, runner):
     def test_help_message_content(self, runner):
         """Test that help message contains expected content."""
         # Arrange & Act
-        result = runner.invoke(app, ["stitch-tracklets", "--help"])
+        result = runner.invoke(
+            app, ["stitch-tracklets", "--help"], env={"TERM": "dumb"}
+        )
 
         # Assert
         assert result.exit_code == 0
diff --git a/tests/utils/segmentation/test_merge_multiple_seg_instances.py b/tests/utils/segmentation/test_merge_multiple_seg_instances.py
index 81ad99d..8320178 100644
--- a/tests/utils/segmentation/test_merge_multiple_seg_instances.py
+++ b/tests/utils/segmentation/test_merge_multiple_seg_instances.py
@@ -164,52 +164,81 @@ def test_zero_default_value(self):
         np.testing.assert_array_equal(result_flags, expected_flags)
 
     def test_empty_matrices_list(self):
-        """Test with empty matrices and flags lists - should raise ValueError."""
+        """Test with empty matrices and flags lists - should return default data."""
         # Arrange
         matrix_list = []
         flag_list = []
 
-        # Act & Assert
-        with pytest.raises(
-            ValueError,
-            match="zero-size array to reduction operation maximum which has no identity",
-        ):
-            merge_multiple_seg_instances(matrix_list, flag_list)
+        # Act
+        result_matrix, result_flags = merge_multiple_seg_instances(
+            matrix_list, flag_list
+        )
+
+        # Assert
+        assert result_matrix.shape == (1, 1, 1, 2)
+        assert result_flags.shape == (1, 1)
+        assert result_matrix.dtype == np.int32
+        assert result_flags.dtype == np.int32
+
+        expected_matrix = np.full([1, 1, 1, 2], -1, dtype=np.int32)
+        expected_flags = np.full([1, 1], -1, dtype=np.int32)
+
+        np.testing.assert_array_equal(result_matrix, expected_matrix)
+        np.testing.assert_array_equal(result_flags, expected_flags)
 
     def test_no_detections_scenario_real_world_crash(self):
-        """Test real-world scenario: videos without mice causing merge function crash.
+        """Test real-world scenario: videos without mice - function should handle gracefully.
 
-        The error occurs at line:
-        padded_matrix = np.full([n_predictions] + np.max(matrix_shapes, axis=0).tolist(), default_val, dtype=np.int32)
+        Previously this would crash with:
+        "zero-size array to reduction operation maximum which has no identity"
 
-        When matrix_list is empty, matrix_shapes becomes an empty array, and np.max
-        on an empty array raises "zero-size array to reduction operation maximum which has no identity".
+        Now the function handles empty lists gracefully by returning default padded data.
         """
         # Arrange - Simulate the exact scenario from multi-segmentation pipeline
         # when no mice are detected in any frame
         frame_contours = []  # No contours detected in any frame
         frame_flags = []  # No flags for any frame
 
-        # Act & Assert - Should raise the exact error from the traceback
-        with pytest.raises(
-            ValueError,
-            match="zero-size array to reduction operation maximum which has no identity",
-        ):
-            merge_multiple_seg_instances(frame_contours, frame_flags)
+        # Act
+        result_matrix, result_flags = merge_multiple_seg_instances(
+            frame_contours, frame_flags
+        )
+
+        # Assert - Should return default padded data instead of crashing
+        assert result_matrix.shape == (1, 1, 1, 2)
+        assert result_flags.shape == (1, 1)
+        assert result_matrix.dtype == np.int32
+        assert result_flags.dtype == np.int32
+
+        expected_matrix = np.full([1, 1, 1, 2], -1, dtype=np.int32)
+        expected_flags = np.full([1, 1], -1, dtype=np.int32)
+
+        np.testing.assert_array_equal(result_matrix, expected_matrix)
+        np.testing.assert_array_equal(result_flags, expected_flags)
 
     def test_no_detections_with_custom_default_value(self):
-        """Test that empty lists scenario fails regardless of default_val parameter."""
+        """Test that empty lists scenario returns default data with custom default value."""
         # Arrange
         matrix_list = []
         flag_list = []
         custom_default = -999
 
-        # Act & Assert - Should fail even with custom default value
-        with pytest.raises(
-            ValueError,
-            match="zero-size array to reduction operation maximum which has no identity",
-        ):
-            merge_multiple_seg_instances(matrix_list, flag_list, custom_default)
+        # Act
+        result_matrix, result_flags = merge_multiple_seg_instances(
+            matrix_list, flag_list, custom_default
+        )
+
+        # Assert - Should return default padded data with custom default value
+        assert result_matrix.shape == (1, 1, 1, 2)
+        assert result_flags.shape == (1, 1)
+        assert result_matrix.dtype == np.int32
+        assert result_flags.dtype == np.int32
+
+        expected_matrix = np.full([1, 1, 1, 2], custom_default, dtype=np.int32)
+        expected_flags = np.full([1, 1], custom_default, dtype=np.int32)
+
+        np.testing.assert_array_equal(result_matrix, expected_matrix)
+        np.testing.assert_array_equal(result_flags, expected_flags)
 
     def test_edge_case_zero_predictions_various_defaults(self):
         """Test zero predictions scenario with various default values to ensure consistency."""
@@ -217,13 +246,24 @@ def test_edge_case_zero_predictions_various_defaults(self):
         matrix_list = []
         flag_list = []
 
-        # Test with different default values - all should fail the same way
+        # Test with different default values - all should return consistent default data
         for default_val in [-1, 0, 1, -100, 100, -999]:
-            with pytest.raises(
-                ValueError,
-                match="zero-size array to reduction operation maximum which has no identity",
-            ):
-                merge_multiple_seg_instances(matrix_list, flag_list, default_val)
+            # Act
+            result_matrix, result_flags = merge_multiple_seg_instances(
+                matrix_list, flag_list, default_val
+            )
+
+            # Assert
+            assert result_matrix.shape == (1, 1, 1, 2)
+            assert result_flags.shape == (1, 1)
+            assert result_matrix.dtype == np.int32
+            assert result_flags.dtype == np.int32
+
+            expected_matrix = np.full([1, 1, 1, 2], default_val, dtype=np.int32)
+            expected_flags = np.full([1, 1], default_val, dtype=np.int32)
+
+            np.testing.assert_array_equal(result_matrix, expected_matrix)
+            np.testing.assert_array_equal(result_flags, expected_flags)
 
     def test_single_empty_matrix(self):
         """Test with single empty matrix (zero segmentation data)."""
diff --git a/uv.lock b/uv.lock
index 235da96..2b2697b 100644
--- a/uv.lock
+++ b/uv.lock
@@ -1,28 +1,29 @@
 version = 1
-revision = 1
+revision = 3
 requires-python = "==3.10.*"
 resolution-markers = [
     "sys_platform == 'darwin'",
     "platform_machine == 'aarch64' and sys_platform == 'linux'",
-    "(platform_machine != 'aarch64' and sys_platform == 'linux') or (sys_platform != 'darwin' and sys_platform != 'linux')",
+    "sys_platform != 'darwin' and sys_platform != 'linux'",
+    "platform_machine != 'aarch64' and sys_platform == 'linux'",
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