Merge pull request #118 from KumarLabJax/bug/fix-queue-size-bug

Set queueSize to 0 to remove job limit on slurm, upgrade dependencies, bump versions

Author: bergsalex

nextflow.config

@@ -6,7 +6,7 @@ manifest {
     mainScript = "main.nf"
     defaultBranch = 'main'
     nextflowVersion = "!>=22.04.3"
-    version = "0.2.4"
+    version = "0.2.5"
     contributors = [
         [name: 'Brian Geuther'],
         [name: 'Alexander Berger-Liedtka']
@@ -35,8 +35,8 @@ params {
     path_depth = 2
 
     /* Image Versions */
-    image_version = '0.2.4'
-    jabs_postprocess_version = '0.5.2'
+    image_version = '0.2.5'
+    jabs_postprocess_version = '0.5.4'
     jabs_behavior_version = '0.36.1'
 
     /*

nextflow/configs/profiles/sumner2.config

@@ -564,6 +564,7 @@ process {
 
 executor {
     name = 'slurm'
+    queueSize = 0
     submitRateLimit = '2 s'
     // Determines the max rate of job submission per time unit, for example '10sec'
     // eg. max 10 jobs per second or '1/2 s' i.e. 1 job submissions every 2 seconds.

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "mouse-tracking"
-version = "0.2.4"
+version = "0.2.5"
 description = "Runtime environment for mouse tracking experiments"
 requires-python = ">=3.10,<3.11"
 packages = ["src/mouse_tracking"]