sync: update from python-copier-template

Author: github-actions[bot]

.pre-commit-config.yaml

@@ -57,3 +57,9 @@ repos:
         require_serial: true
         language: unsupported
         pass_filenames: false
+      - id: deptry
+        name: deptry
+        entry: uv run deptry .
+        language: unsupported
+        always_run: true
+        pass_filenames: false

pyproject.toml

@@ -54,14 +54,32 @@ select = [
     "C404",  # flake8-comprehensions: unnecessary-list-comprehension-dict
     "C405",  # flake8-comprehensions: unnecessary-literal-set
     "W605",  # pycodestyle: invalid-escape-sequence
+    "S",  # flake8-bandit (security)
+    "RUF",  # ruff-specific rules
+    "T20",  # flake8-print (no print statements)
+    "PT",  # flake8-pytest-style
+    "A",  # flake8-builtins (no builtin shadowing)
+    "PERF",  # perflint (performance anti-patterns)
+    "N",  # pep8-naming
+    "RET",  # flake8-return
+    "PIE",  # flake8-pie
+    "LOG",  # flake8-logging
+    "NPY",  # numpy-specific rules
+    "PD",  # pandas-vet
+    "ISC001",  # flake8-implicit-str-concat: single-line implicit string concatenation
+    "TRY",  # tryceratops (exception handling best practices)
+    "PLE",  # pylint errors
+    "PLW",  # pylint warnings
+    "PLC",  # pylint convention
+    "FAST",  # fastapi
 ]
 
 # Ignore D100 Missing docstring in public module
-ignore = ["D100"]
+ignore = ["D100", "TRY003"]
 [tool.ruff.lint.per-file-ignores]
 # Also ignore `D104` in all `__init__.py` files.
 "__init__.py" = ["D104"]
-"tests/*.py" = ["D"]
+"tests/*.py" = ["D", "S101"]
 
 [tool.ruff.lint.pydocstyle]
 convention = "numpy"
@@ -84,4 +102,5 @@ dev = [
     "prek",
     "ipykernel",
     "ty",
+    "deptry>=0.25",
 ]