Change module names

[koppor]

In #13401, we switched the build tooling. Thereby, we "renamed" Java modules. This causes issues: APIdia-net/apidia.net#2 (comment)

Task: Semantically (revert) the update

1. Adapt module names in

   jabref/build-logic/src/main/kotlin/org.jabref.gradle.base.dependency-rules.gradle.kts

   Line 80 in 28b7350

   extraJavaModuleInfo {

   to generate the names as they were before
2. Adapt all module-info.java accordingly.

The diff for one module java is determined as follows

$ git diff 8f92294561fe7b93530f46d7f8fe394cbdb12441 main -- jablib/src/main/java/module-info.java 

This has to be reverted (and new updates be kept)

-    requires flexmark;
-    requires flexmark.html2md.converter;
-    requires flexmark.util.ast;
-    requires flexmark.util.data;
+    requires com.vladsch.flexmark;
+    requires com.vladsch.flexmark.html2md.converter;
+    requires com.vladsch.flexmark.util.ast;

(and much more)

Hints

⚠ This is a good to about build systems. This issue cannot be solved with an AI (alone). You really have to think though the build systems for yourself! Take this issue only if you are willing to invest significant time. ⚠

• Execute the gradle task: jabgui > application > run to check if the system builds. If not, you need to adapt the .kts and/or module-info.java files.
• This is more a code-and-fix task
• The build will take some seconds until you get feedback. Reserve some time and be prepared to "idle".
• A first test is that JabGui runs; tests if it fits for Status Log of JabRef 5.15 APIdia-net/apidia.net#2 (comment) can be done by jar --file flexmark-0.64.8.jar -d. You will find the jars by everything. Is much effort. If this is too much effort for you, you can submit a PR and then ask Stewori to check.

[Stewori]

From my log I do have a list of affected module names for jablib:

com.github.java.keyring
com.googlecode.dd.plist
com.konghq.unirest.java.core
com.konghq.unirest.modules.gson
com.lihaoyi.fastparse
com.vladsch.flexmark
com.vladsch.flexmark.html2md.converter
com.vladsch.flexmark.util.ast
com.vladsch.flexmark.util.data
de.rototor.snuggletex.core
de.undercouch.citeproc.java
dev.langchain4j
dev.langchain4j.core
dev.langchain4j.google.ai.gemini
dev.langchain4j.hugging.face
dev.langchain4j.mistral.ai
dev.langchain4j.open.ai
info.debatty.java.string.similarity
io.github.stefanbratanov.jvm.openai
io.zonky.test.embedded.postgres
org.apache.velocity.engine.core
org.jbibtex

The most efficient way to obtain the original names is to check an older version of module-info.java, e.g. this one from 2025-06-27 (had to append .txt to the filename because Github refuses to include .java files):

module-info.java.txt

More generally, one can retrieve the original module name for a jar file from the output of

java -p blah.jar --list-modules

(usually the last line of the output is the relevant one)
or

jar --file blah.jar -d

(here usually the first line is the relevant one)

[Munhangyeol]

/assign-me

[github-actions]

👋 Hey @Munhangyeol, thank you for your interest in this issue! 🎉

We're excited to have you on board. Start by exploring our Contributing guidelines, and don't forget to check out our workspace setup guidelines to get started smoothly.

For questions on JabRef functionality and the code base, you can consult the JabRef Guru or ask on our Gitter chat.

In case you encounter failing tests during development, please check our developer FAQs!

Having any questions or issues? Feel free to ask here on GitHub. Need help setting up your local workspace? Join the conversation on JabRef's Gitter chat. And don't hesitate to open a (draft) pull request early on to show the direction it is heading towards. This way, you will receive valuable feedback.

Happy coding! 🚀

[koppor]

Here links to the module-info.java files before:

• https://github.com/JabRef/jabref/blob/2c511c2b33e296386f0209db259a52ffb4e41846/jablib/src/main/java/module-info.java
• https://github.com/JabRef/jabref/blob/2c511c2b33e296386f0209db259a52ffb4e41846/jabgui/src/main/java/module-info.java

[Stewori]

For jabgui I get this list of affected module names:

com.github.java.keyring
com.googlecode.dd.plist
com.konghq.unirest.java.core
com.konghq.unirest.modules.gson
com.lihaoyi.fastparse
com.pixelduke.fxthemes
com.vladsch.flexmark
com.vladsch.flexmark.html2md.converter
com.vladsch.flexmark.util.ast
com.vladsch.flexmark.util.data
de.rototor.snuggletex.core
de.undercouch.citeproc.java
dev.langchain4j
dev.langchain4j.core
dev.langchain4j.google.ai.gemini
dev.langchain4j.hugging.face
dev.langchain4j.mistral.ai
dev.langchain4j.open.ai
info.debatty.java.string.similarity
io.github.stefanbratanov.jvm.openai
io.zonky.test.embedded.postgres
org.apache.velocity.engine.core
org.jbibtex
org.reactfx

Note: The list might contain false-positives as it just lists all modules unknown to my current config.