CITATION.cff

cff-version: 1.2.0
message: "If you use this benchmark, please cite it as below."
type: software
title: "Multiome Peak-Gene Reranking Benchmark"
abstract: >
  A reproducible, containerized benchmark that reranks a fixed set of Signac
  LinkPeaks candidate peak-gene pairs from 10x PBMC multiome data using
  interpretable RNA-ATAC coactivity, genomic distance and TF/motif support, and
  evaluates the result against SCENT with explicit controls for
  promoter-proximity confounding. This is a benchmark and diagnostic study, not
  a peak-gene linking method.
authors:
  - family-names: Inkala
    given-names: Simo
    orcid: "https://orcid.org/0009-0002-2091-8436"
repository-code: "https://github.com/Inkasimo/multiome-link-ranking"
doi: "10.5281/zenodo.22032460"
version: "0.1.0"
date-released: "2026-08-20"
license: "MIT"
keywords:
  - single-cell multiome
  - peak-gene links
  - benchmarking
  - SCENT
  - LinkPeaks