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The version in that container is parser = argparse.ArgumentParser(description='Version: 1.3.1')
The container looks identical that your version 1.3.1.
The question that I have is why spliceai add this ##reference=GRCh37/hg19 when input VCF and the ${bwarefgenomepath} I used above are all GRCh38. I have checked with spliceAI lookup and the annotation is correct. Just wonder why this is added?
Quick question
I am using this
The version in that container is
parser = argparse.ArgumentParser(description='Version: 1.3.1')The container looks identical that your version 1.3.1.
The question that I have is why spliceai add this
##reference=GRCh37/hg19when input VCF and the${bwarefgenomepath}I used above are all GRCh38. I have checked with spliceAI lookup and the annotation is correct. Just wonder why this is added?