From 6091a7b07c07ed24c252c9dbe0b93ef276636279 Mon Sep 17 00:00:00 2001 From: Lance-Drane Date: Mon, 6 Jul 2026 16:01:27 -0400 Subject: [PATCH 1/6] #45 - migrate to UV workspaces and use separate packages for intersect_dial_dataclass + dial_service Signed-off-by: Lance-Drane --- .dockerignore | 3 +- .github/workflows/ci.yml | 2 +- .github/workflows/pypi-release.yml | 37 ++++++++++ .readthedocs.yaml | 6 +- Dockerfile | 11 ++- README.md | 26 +++++-- docs/active_learning/client_guide.rst | 4 +- docs/active_learning/dataclass_reference.rst | 4 +- packages/intersect_dial_dataclass/README.md | 13 ++++ .../intersect_dial_dataclass/pyproject.toml | 34 +++++++++ .../src/intersect_dial_dataclass}/__init__.py | 0 .../dial_dataclass.py | 0 .../dial_dataclass_responses.py | 0 .../src/intersect_dial_dataclass}/logger.py | 0 .../pydantic_helpers.py | 0 pyproject.toml | 64 +++------------- scripts/1d_sable_client.py | 27 ++++--- scripts/1d_sinusoidal_growth_client.py | 15 ++-- scripts/2d_rosenbrock_client.py | 18 ++--- scripts/manual_client.py | 13 ++-- services/dial_service/README.md | 7 ++ services/dial_service/pyproject.toml | 45 +++++++++++ .../src}/dial_service/__init__.py | 0 .../src}/dial_service/backends/__init__.py | 0 .../dial_service/backends/gpax_backend.py | 0 .../dial_service/backends/sable_backend.py | 0 .../dial_service/backends/sklearn_backend.py | 15 +++- .../dial_service/src}/dial_service/core.py | 0 .../src}/dial_service/dial_service.py | 17 ++--- .../dial_service/src}/dial_service/logger.py | 0 .../src}/dial_service/mongo_handler.py | 8 +- .../src}/dial_service/serverside_data.py | 3 +- .../service_specific_dataclasses.py | 6 +- .../src}/dial_service/utilities/__init__.py | 0 .../src}/dial_service/utilities/strategies.py | 0 tests/benchmarks/__init__.py | 0 tests/benchmarks/test_rosenbrock.py | 68 +++++++++++++---- tests/benchmarks/test_strainmap.py | 67 ++++++++++++----- tests/unit/test_internals.py | 11 ++- uv.lock | 74 +++++++++---------- 40 files changed, 399 insertions(+), 199 deletions(-) create mode 100644 .github/workflows/pypi-release.yml create mode 100644 packages/intersect_dial_dataclass/README.md create mode 100644 packages/intersect_dial_dataclass/pyproject.toml rename {src/dial_dataclass => packages/intersect_dial_dataclass/src/intersect_dial_dataclass}/__init__.py (100%) rename {src/dial_dataclass => packages/intersect_dial_dataclass/src/intersect_dial_dataclass}/dial_dataclass.py (100%) rename {src/dial_dataclass => packages/intersect_dial_dataclass/src/intersect_dial_dataclass}/dial_dataclass_responses.py (100%) rename {src/dial_dataclass => packages/intersect_dial_dataclass/src/intersect_dial_dataclass}/logger.py (100%) rename {src/dial_dataclass => packages/intersect_dial_dataclass/src/intersect_dial_dataclass}/pydantic_helpers.py (100%) create mode 100644 services/dial_service/README.md create mode 100644 services/dial_service/pyproject.toml rename {src => services/dial_service/src}/dial_service/__init__.py (100%) rename {src => services/dial_service/src}/dial_service/backends/__init__.py (100%) rename {src => services/dial_service/src}/dial_service/backends/gpax_backend.py (100%) rename {src => services/dial_service/src}/dial_service/backends/sable_backend.py (100%) rename {src => services/dial_service/src}/dial_service/backends/sklearn_backend.py (95%) rename {src => services/dial_service/src}/dial_service/core.py (100%) rename {src => services/dial_service/src}/dial_service/dial_service.py (99%) rename {src => services/dial_service/src}/dial_service/logger.py (100%) rename {src => services/dial_service/src}/dial_service/mongo_handler.py (96%) rename {src => services/dial_service/src}/dial_service/serverside_data.py (99%) rename {src => services/dial_service/src}/dial_service/service_specific_dataclasses.py (93%) rename {src => services/dial_service/src}/dial_service/utilities/__init__.py (100%) rename {src => services/dial_service/src}/dial_service/utilities/strategies.py (100%) create mode 100644 tests/benchmarks/__init__.py diff --git a/.dockerignore b/.dockerignore index 970e739..0906483 100644 --- a/.dockerignore +++ b/.dockerignore @@ -1,5 +1,6 @@ * -!src/**/* +!packages/**/* +!services/**/* !scripts/**/* !tests/**/* !pyproject.toml diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 9e8a702..84b4565 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -67,7 +67,7 @@ jobs: run: | uv sync --locked --all-extras --all-groups continue-on-error: ${{ matrix.os.continue-on-error || matrix.python-version.continue-on-error }} - - run: pytest tests/ --cov=src/ --cov-report=html:reports/htmlcov/ --cov-report=xml:reports/coverage_report.xml --junitxml=reports/junit.xml + - run: pytest tests/ --cov=packages/ --cov=services/ --cov-report=html:reports/htmlcov/ --cov-report=xml:reports/coverage_report.xml --junitxml=reports/junit.xml continue-on-error: ${{ matrix.os.continue-on-error || matrix.python-version.continue-on-error }} docker-test: diff --git a/.github/workflows/pypi-release.yml b/.github/workflows/pypi-release.yml new file mode 100644 index 0000000..7a98135 --- /dev/null +++ b/.github/workflows/pypi-release.yml @@ -0,0 +1,37 @@ +name: Release + +on: + push: + tags: + - "v[0-9]+.[0-9]+.[0-9]+*" + workflow_dispatch: + +jobs: + build: + if: startsWith(github.ref, 'refs/tags/') + runs-on: ubuntu-latest + permissions: + contents: write + id-token: write + environment: + name: pypi + url: https://pypi.org/p/intersect-sdk + steps: + - uses: actions/checkout@v4 + - name: Setup UV + uses: astral-sh/setup-uv@v7 + with: + python-version: "3.12" + - name: "Build package" + run: uv build --no-create-gitignore packages/intersect_dial_dataclass + - name: Publish package to PyPI + # if dial_dataclass and dial_service have different versions, then don't try to publish it to PyPI + run: if [ $(python -c 'from importlib.metadata import version; print(version("intersect_dial_dataclass") == version("dial_service"))') == 'True' ]; then uv publish; fi + - name: upload to github release + uses: docker://antonyurchenko/git-release:v5 + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + # assume any version with "a" (gets "ALPHA") or "b" (gets BETA) or "rc" (release candidates) will be a prerelease + PRE_RELEASE: "${{ contains(github.ref_name, 'a') || contains(github.ref_name, 'b') || contains(github.ref_name, 'rc') }}" + with: + args: dist/* diff --git a/.readthedocs.yaml b/.readthedocs.yaml index 567cd3b..9c9dc15 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -17,7 +17,7 @@ formats: all python: install: - - method: pip - path: . - extra_requirements: + - method: uv + command: sync + groups: - docs diff --git a/Dockerfile b/Dockerfile index e2d59ca..70ab6eb 100644 --- a/Dockerfile +++ b/Dockerfile @@ -27,15 +27,20 @@ WORKDIR /app RUN --mount=type=cache,target=/root/.cache/uv \ --mount=type=bind,source=uv.lock,target=uv.lock \ --mount=type=bind,source=pyproject.toml,target=pyproject.toml \ - uv sync --locked --no-install-project --no-editable + --mount=type=bind,source=packages/intersect_dial_dataclass/pyproject.toml,target=packages/intersect_dial_dataclass/pyproject.toml \ + --mount=type=bind,source=services/dial_service/pyproject.toml,target=services/dial_service/pyproject.toml \ + uv sync --locked --package dial_service --no-install-workspace --no-editable # Sync the project -COPY src src +COPY packages packages +COPY services services RUN --mount=type=cache,target=/root/.cache/uv \ --mount=type=bind,source=uv.lock,target=uv.lock \ --mount=type=bind,source=pyproject.toml,target=pyproject.toml \ + --mount=type=bind,source=packages/intersect_dial_dataclass/pyproject.toml,target=packages/intersect_dial_dataclass/pyproject.toml \ + --mount=type=bind,source=services/dial_service/pyproject.toml,target=services/dial_service/pyproject.toml \ --mount=type=bind,source=README.md,target=README.md \ - uv sync --locked --no-editable + uv sync --locked --package dial_service --no-editable FROM --platform=$BUILDPLATFORM gcr.io/distroless/cc:nonroot AS runner diff --git a/README.md b/README.md index f17f8d4..d7e047f 100644 --- a/README.md +++ b/README.md @@ -2,23 +2,32 @@ # Dial +This repository is a uv workspace with two members: + +- `packages/intersect_dial_dataclass` (package of the core DIAL types, available on PyPI) +- `services/dial_service` (DIAL service runtime package, available as a Docker container and a Helm chart) + ## Requirements - Python >= 3.10 ## Installing (Non-developers) -To install intersect-sdk from PyPI: +When writing a Client, most users will only need to install the `intersect-sdk` and `intersect-dial-dataclass` . -`pip install intersect-sdk` +To install all dependencies from PyPI: -To install Dial from source, git clone this repository and run the following from the root directory (that is, within the neeter-active-learning directory): +``` +pip install intersect-sdk intersect-dial-dataclass +``` -`pip install .` +To install the publishable dataclass package from source, run: -Alternatively, both intersect-sdk and Dial may be installed with the following: +`pip install ./packages/dial_dataclass` -`pip install -e .` +For more advanced users, to install the service package from source, run: + +`pip install -e ./packages/dial_dataclass -e ./services/dial_service` ## Installing (developers) @@ -130,3 +139,8 @@ You will need `pytest` installed to run the tests. You will need to make sure the `docs` optional dependency group is installed. Then you can run `sphinx build -W --keep-going docs/ docs/_build/` . To quickly spin up the documentation web server on `http://localhost:8000` : `python -m http.server -d docs/_build/` + +## Version management + +- always bump `dial_service` whenever we want to tag a new version, and have the tag reference the `dial_service` version +- when bumping `intersect_dial_dataclass` version, bump it to match the `dial_service` version (okay to skip versions) diff --git a/docs/active_learning/client_guide.rst b/docs/active_learning/client_guide.rst index 3999d42..b89c9b3 100644 --- a/docs/active_learning/client_guide.rst +++ b/docs/active_learning/client_guide.rst @@ -12,7 +12,7 @@ When you return the ``IntersectClientCallback`` object from the Client callback .. codeblock:: python from intersect_sdk import IntersectClientCallback, IntersectDirectMessageParams, INTERSECT_RESPONSE_VALUE - from dial_dataclass import ( + from intersect_dial_dataclass import ( DialWorkflowCreationParamsClient, DialWorkflowDatasetUpdate, DialWorkflowDatasetUpdates, @@ -76,7 +76,7 @@ To validate the response from a message, you can use the dial_dataclasses types .. codeblock:: python from intersect_sdk import IntersectClientCallback, IntersectDirectMessageParams, INTERSECT_RESPONSE_VALUE - from dial_dataclass import + from intersect_dial_dataclass import class CustomOrchestrator: # ... diff --git a/docs/active_learning/dataclass_reference.rst b/docs/active_learning/dataclass_reference.rst index 135a785..4c4a015 100644 --- a/docs/active_learning/dataclass_reference.rst +++ b/docs/active_learning/dataclass_reference.rst @@ -9,7 +9,7 @@ If using the iHub interface, these schemas and their descriptions should be visi Request Objects =============== -.. automodule:: dial_dataclass.dial_dataclass +.. automodule:: intersect_dial_dataclass.dial_dataclass :members: :undoc-members: :exclude-members: model_computed_fields, model_config, model_fields @@ -17,7 +17,7 @@ Request Objects Response Objects ================ -.. automodule:: dial_dataclass.dial_dataclass_responses +.. automodule:: intersect_dial_dataclass.dial_dataclass_responses :members: :undoc-members: :exclude-members: model_computed_fields, model_config, model_fields diff --git a/packages/intersect_dial_dataclass/README.md b/packages/intersect_dial_dataclass/README.md new file mode 100644 index 0000000..2e860d4 --- /dev/null +++ b/packages/intersect_dial_dataclass/README.md @@ -0,0 +1,13 @@ +# intersect_dial_dataclass + +Publishable data model package for DIAL clients and services. + +## Install + +From PyPI: + +`pip install intersect_dial_dataclass` + +Or from source: + +`pip install ./packages/intersect_dial_dataclass` diff --git a/packages/intersect_dial_dataclass/pyproject.toml b/packages/intersect_dial_dataclass/pyproject.toml new file mode 100644 index 0000000..b53ae3f --- /dev/null +++ b/packages/intersect_dial_dataclass/pyproject.toml @@ -0,0 +1,34 @@ +[project] +name = "intersect-dial-dataclass" +version = "0.1.6" +authors = [ + { name = "Stephen DeWitt", email = "dewittsj@ornl.gov" }, + { name = "Lance Drane", email = "dranelt@ornl.gov" }, + { name = "David Joy", email = "davidjoy022@gmail.com" }, + { name = "Jacob Sweet", email = "jsweet@gatech.edu" }, + { name = "Ankit Shrivastava", email = "shrivastavaa@ornl.gov" }, + { name = "Konstantin Pieper", email = "pieperk@ornl.gov" }, + { name = "Viktor Reshniak", email = "reshniakv@ornl.gov" }, +] +description = "Dial dataclass models for client and service integration" +readme = "README.md" +requires-python = ">=3.10" +keywords = ["active learning", "dataclass"] +license = { text = "BSD-3-Clause" } +classifiers = ["Programming Language :: Python :: 3"] +dependencies = [ + "pydantic>=2.13.0", +] + +[project.urls] +Homepage = "https://github.com/INTERSECT-DIAL/dial/" +Changelog = "https://github.com/INTERSECT-DIAL/dial/blob/main/CHANGELOG.md" +Documentation = "https://intersect-dial.readthedocs.io/en/latest/" +Issues = "https://github.com/INTERSECT-DIAL/dial/issues" + +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" + +[tool.hatch.build.targets.wheel] +packages = ["src/intersect_dial_dataclass"] diff --git a/src/dial_dataclass/__init__.py b/packages/intersect_dial_dataclass/src/intersect_dial_dataclass/__init__.py similarity index 100% rename from src/dial_dataclass/__init__.py rename to packages/intersect_dial_dataclass/src/intersect_dial_dataclass/__init__.py diff --git a/src/dial_dataclass/dial_dataclass.py b/packages/intersect_dial_dataclass/src/intersect_dial_dataclass/dial_dataclass.py similarity index 100% rename from src/dial_dataclass/dial_dataclass.py rename to packages/intersect_dial_dataclass/src/intersect_dial_dataclass/dial_dataclass.py diff --git a/src/dial_dataclass/dial_dataclass_responses.py b/packages/intersect_dial_dataclass/src/intersect_dial_dataclass/dial_dataclass_responses.py similarity index 100% rename from src/dial_dataclass/dial_dataclass_responses.py rename to packages/intersect_dial_dataclass/src/intersect_dial_dataclass/dial_dataclass_responses.py diff --git a/src/dial_dataclass/logger.py b/packages/intersect_dial_dataclass/src/intersect_dial_dataclass/logger.py similarity index 100% rename from src/dial_dataclass/logger.py rename to packages/intersect_dial_dataclass/src/intersect_dial_dataclass/logger.py diff --git a/src/dial_dataclass/pydantic_helpers.py b/packages/intersect_dial_dataclass/src/intersect_dial_dataclass/pydantic_helpers.py similarity index 100% rename from src/dial_dataclass/pydantic_helpers.py rename to packages/intersect_dial_dataclass/src/intersect_dial_dataclass/pydantic_helpers.py diff --git a/pyproject.toml b/pyproject.toml index b36ae29..7a74467 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,41 +1,11 @@ -[project] -name = "dial" -version = "0.1.6" -authors = [ - { name = "Stephen DeWitt", email = "dewittsj@ornl.gov" }, - { name = "Lance Drane", email = "dranelt@ornl.gov" }, - { name = "David Joy", email = "davidjoy022@gmail.com" }, - { name = "Jacob Sweet", email = "jsweet@gatech.edu" }, - { name = "Ankit Shrivastava", email = "shrivastavaa@ornl.gov" }, - { name = "Konstantin Pieper", email = "pieperk@ornl.gov" }, - { name = "Viktor Reshniak", email = "reshniakv@ornl.gov" }, +[tool.uv.workspace] +members = [ + "packages/intersect_dial_dataclass", + "services/dial_service", ] -description = "Dial (Distributed INTERSECT Active Learning): An INTERSECT service that provides Bayesian optimization and active learning" -readme = "README.md" -requires-python = ">=3.10" -keywords = ["active learning"] -license = { text = "BSD-3-Clause" } -classifiers = ["Programming Language :: Python :: 3"] -# TODO move some dependencies into optional dependencies -dependencies = [ - "intersect_sdk>=0.9.3,<0.10.0", - "numpy", - "scikit-learn>=1.4.0,<2.0.0", # TODO consider making an optional dependency group - "scipy>=1.12.0,<2.0.0", - "gpax>=0.1.8", # TODO consider making an optional dependency group - "numpyro<0.20.1", # depend on older numpyro for gpax (numpyro.contrib.module: random_haiku_module) - "pymongo>=4.12.1", # TODO - this is only needed for dial_service, dial_dataclass can use a simple fixture for ObjectID representation which allows it to skip this dependency - "sable @ git+https://code.ornl.gov/sable/sable.git", # TODO this references the internal repo, transition to public version -] - -[project.urls] -Homepage = "https://github.com/INTERSECT-DIAL/dial/" -Changelog = "https://github.com/INTERSECT-DIAL/dial/blob/main/CHANGELOG.md" -Documentation = "https://intersect-dial.readthedocs.io/en/latest/" -Issues = "https://github.com/INTERSECT-DIAL/dial/issues" -[project.optional-dependencies] -docs = ["sphinx>=5.3.0", "furo>=2023.3.27"] +[tool.uv.sources] +intersect_dial_dataclass = { workspace = true } [dependency-groups] dev = [ @@ -48,25 +18,13 @@ dev = [ "statsmodels>=0.14.4", "matplotlib>=3.8.2,<4.0.0", ] - -# TODO - consider swapping to scikit-build-core backend if we need C/C++ extensions -[build-system] -requires = ["hatchling"] -build-backend = "hatchling.build" - -[tool.hatch.build.targets.wheel] -packages = ["src/dial_dataclass", "src/dial_service"] - -[tool.hatch.metadata] -# TODO - remove when Sable is published to PyPI -allow-direct-references = true - -#[tool.pdm.scripts] -# add --cov-fail-under= when ready to require a minimum coverage amount -#test-all = "pytest tests/ --cov=src/ --cov-report=html:reports/htmlcov/ --cov-report=xml:reports/coverage_report.xml --junitxml=reports/junit.xml" -#test-unit = "pytest tests/unit/" +docs = [ + "sphinx>=5.3.0", + "furo>=2023.3.27", +] [tool.ruff] +target-version = "py310" line-length = 100 format = { quote-style = 'single' } namespace-packages = ["scripts/", "tests/"] diff --git a/scripts/1d_sable_client.py b/scripts/1d_sable_client.py index 727365b..87d6bc2 100644 --- a/scripts/1d_sable_client.py +++ b/scripts/1d_sable_client.py @@ -8,6 +8,13 @@ import matplotlib as mpl import matplotlib.pyplot as plt import numpy as np +from intersect_dial_dataclass import ( + DialInputPredictions, + DialInputSingleOtherStrategy, + DialWorkflowCreationParamsClient, + DialWorkflowDatasetUpdate, + Normal, +) from intersect_sdk import ( INTERSECT_RESPONSE_VALUE, HierarchyConfig, @@ -18,14 +25,6 @@ default_intersect_lifecycle_loop, ) -from dial_dataclass import ( - DialInputPredictions, - DialInputSingleOtherStrategy, - DialWorkflowCreationParamsClient, - DialWorkflowDatasetUpdate, - Normal, -) - mpl.use('agg') logging.basicConfig(level=logging.INFO) @@ -100,7 +99,11 @@ def __init__(self, service_destination: str): self.test_points = self.x_test.reshape(-1, 1).tolist() self.kernel = 'rbf' - self.kernel_args = {'x_range': [0.0, 1.0], 'sigma_range': [2.5e-3, 0.5], 'gamma': 0.1} + self.kernel_args = { + 'x_range': [0.0, 1.0], + 'sigma_range': [2.5e-3, 0.5], + 'gamma': 0.1, + } self.backend = 'sable' self.backend_args = { 'n_features': 5000, @@ -123,7 +126,11 @@ def __init__(self, service_destination: str): self.service_destination = service_destination def __call__( - self, _source: str, operation: str, _has_error: bool, payload: INTERSECT_RESPONSE_VALUE + self, + _source: str, + operation: str, + _has_error: bool, + payload: INTERSECT_RESPONSE_VALUE, ) -> IntersectClientCallback: if _has_error: print('============ERROR==============', file=sys.stderr) diff --git a/scripts/1d_sinusoidal_growth_client.py b/scripts/1d_sinusoidal_growth_client.py index 756f4e8..a9ab31d 100644 --- a/scripts/1d_sinusoidal_growth_client.py +++ b/scripts/1d_sinusoidal_growth_client.py @@ -8,6 +8,13 @@ import matplotlib as mpl import matplotlib.pyplot as plt import numpy as np +from intersect_dial_dataclass import ( + DialInputPredictions, + DialInputSingleOtherStrategy, + DialWorkflowCreationParamsClient, + DialWorkflowDatasetUpdate, + Normal, +) from intersect_sdk import ( INTERSECT_RESPONSE_VALUE, HierarchyConfig, @@ -18,14 +25,6 @@ default_intersect_lifecycle_loop, ) -from dial_dataclass import ( - DialInputPredictions, - DialInputSingleOtherStrategy, - DialWorkflowCreationParamsClient, - DialWorkflowDatasetUpdate, - Normal, -) - mpl.use('agg') logging.basicConfig(level=logging.INFO) diff --git a/scripts/2d_rosenbrock_client.py b/scripts/2d_rosenbrock_client.py index 9be7e92..9bfc0dd 100644 --- a/scripts/2d_rosenbrock_client.py +++ b/scripts/2d_rosenbrock_client.py @@ -10,6 +10,15 @@ import matplotlib as mpl import matplotlib.pyplot as plt import numpy as np + +# from scipy.stats import qmc +from intersect_dial_dataclass import ( + DialInputPredictions, + DialInputSingleConfidenceBound, + DialInputSingleOtherStrategy, + DialWorkflowCreationParamsClient, + DialWorkflowDatasetUpdate, +) from intersect_sdk import ( INTERSECT_RESPONSE_VALUE, HierarchyConfig, @@ -20,15 +29,6 @@ default_intersect_lifecycle_loop, ) -# from scipy.stats import qmc -from dial_dataclass import ( - DialInputPredictions, - DialInputSingleConfidenceBound, - DialInputSingleOtherStrategy, - DialWorkflowCreationParamsClient, - DialWorkflowDatasetUpdate, -) - mpl.use('agg') logging.basicConfig(level=logging.INFO) logger = logging.getLogger(__name__) diff --git a/scripts/manual_client.py b/scripts/manual_client.py index 47241db..d5be660 100644 --- a/scripts/manual_client.py +++ b/scripts/manual_client.py @@ -9,6 +9,12 @@ import matplotlib as mpl import matplotlib.pyplot as plt import numpy as np +from intersect_dial_dataclass import ( + DialInputPredictions, + DialInputSingleOtherStrategy, + DialWorkflowCreationParamsClient, + DialWorkflowDatasetUpdate, +) from intersect_sdk import ( INTERSECT_RESPONSE_VALUE, HierarchyConfig, @@ -19,13 +25,6 @@ default_intersect_lifecycle_loop, ) -from dial_dataclass import ( - DialInputPredictions, - DialInputSingleOtherStrategy, - DialWorkflowCreationParamsClient, - DialWorkflowDatasetUpdate, -) - mpl.use('agg') logging.basicConfig(level=logging.INFO) diff --git a/services/dial_service/README.md b/services/dial_service/README.md new file mode 100644 index 0000000..89a27e9 --- /dev/null +++ b/services/dial_service/README.md @@ -0,0 +1,7 @@ +# dial_service + +DIAL service runtime package. + +## Local run + +`python scripts/launch_service.py` diff --git a/services/dial_service/pyproject.toml b/services/dial_service/pyproject.toml new file mode 100644 index 0000000..0ea38ed --- /dev/null +++ b/services/dial_service/pyproject.toml @@ -0,0 +1,45 @@ +[project] +name = "dial_service" +version = "0.1.6" +authors = [ + { name = "Stephen DeWitt", email = "dewittsj@ornl.gov" }, + { name = "Lance Drane", email = "dranelt@ornl.gov" }, + { name = "David Joy", email = "davidjoy022@gmail.com" }, + { name = "Jacob Sweet", email = "jsweet@gatech.edu" }, + { name = "Ankit Shrivastava", email = "shrivastavaa@ornl.gov" }, + { name = "Konstantin Pieper", email = "pieperk@ornl.gov" }, + { name = "Viktor Reshniak", email = "reshniakv@ornl.gov" }, +] +description = "Dial service runtime for Bayesian optimization and active learning" +readme = "README.md" +requires-python = ">=3.10" +keywords = ["active learning", "service"] +license = { text = "BSD-3-Clause" } +classifiers = ["Private :: Do Not Upload"] +dependencies = [ + "intersect_dial_dataclass", + "intersect_sdk>=0.9.3,<0.10.0", + "numpy", + "scikit-learn>=1.4.0,<2.0.0", + "scipy>=1.12.0,<2.0.0", + "gpax>=0.1.8", + "numpyro<0.20.1", + "pymongo>=4.12.1", + "sable @ git+https://code.ornl.gov/sable/sable.git", # TODO replace with PyPI version when available +] + +[project.urls] +Homepage = "https://github.com/INTERSECT-DIAL/dial/" +Changelog = "https://github.com/INTERSECT-DIAL/dial/blob/main/CHANGELOG.md" +Documentation = "https://intersect-dial.readthedocs.io/en/latest/" +Issues = "https://github.com/INTERSECT-DIAL/dial/issues" + +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" + +[tool.hatch.build.targets.wheel] +packages = ["src/dial_service"] + +[tool.hatch.metadata] +allow-direct-references = true diff --git a/src/dial_service/__init__.py b/services/dial_service/src/dial_service/__init__.py similarity index 100% rename from src/dial_service/__init__.py rename to services/dial_service/src/dial_service/__init__.py diff --git a/src/dial_service/backends/__init__.py b/services/dial_service/src/dial_service/backends/__init__.py similarity index 100% rename from src/dial_service/backends/__init__.py rename to services/dial_service/src/dial_service/backends/__init__.py diff --git a/src/dial_service/backends/gpax_backend.py b/services/dial_service/src/dial_service/backends/gpax_backend.py similarity index 100% rename from src/dial_service/backends/gpax_backend.py rename to services/dial_service/src/dial_service/backends/gpax_backend.py diff --git a/src/dial_service/backends/sable_backend.py b/services/dial_service/src/dial_service/backends/sable_backend.py similarity index 100% rename from src/dial_service/backends/sable_backend.py rename to services/dial_service/src/dial_service/backends/sable_backend.py diff --git a/src/dial_service/backends/sklearn_backend.py b/services/dial_service/src/dial_service/backends/sklearn_backend.py similarity index 95% rename from src/dial_service/backends/sklearn_backend.py rename to services/dial_service/src/dial_service/backends/sklearn_backend.py index 2d649fe..7f877f6 100644 --- a/src/dial_service/backends/sklearn_backend.py +++ b/services/dial_service/src/dial_service/backends/sklearn_backend.py @@ -65,14 +65,20 @@ def get_kernel(data): if base_kernel_cls == DotProduct: base_params = {'sigma_0': 1.0, 'sigma_0_bounds': 'fixed'} | base_params else: - base_params = {'length_scale': 1.0, 'length_scale_bounds': 'fixed'} | base_params + base_params = { + 'length_scale': 1.0, + 'length_scale_bounds': 'fixed', + } | base_params base_kernel = base_kernel_cls(**base_params) # scale the prior variance by using a ConstantKernel const_params = _filter_kwargs_for(ConstantKernel, _params) if const_params: # use a fixed value by default, unless bounds are explicitly provided - const_params = {'constant_value': 1.0, 'constant_value_bounds': 'fixed'} | const_params + const_params = { + 'constant_value': 1.0, + 'constant_value_bounds': 'fixed', + } | const_params constant_kernel = ConstantKernel(**const_params) kernel = constant_kernel * base_kernel else: @@ -82,7 +88,10 @@ def get_kernel(data): white_params = _filter_kwargs_for(WhiteKernel, _params) if white_params: # use a fixed value by default, unless bounds are explicitly provided - white_params = {'noise_level': 1e-12, 'noise_level_bounds': 'fixed'} | white_params + white_params = { + 'noise_level': 1e-12, + 'noise_level_bounds': 'fixed', + } | white_params white_kernel = WhiteKernel(**white_params) kernel = kernel + white_kernel diff --git a/src/dial_service/core.py b/services/dial_service/src/dial_service/core.py similarity index 100% rename from src/dial_service/core.py rename to services/dial_service/src/dial_service/core.py diff --git a/src/dial_service/dial_service.py b/services/dial_service/src/dial_service/dial_service.py similarity index 99% rename from src/dial_service/dial_service.py rename to services/dial_service/src/dial_service/dial_service.py index bc1a5be..5436e1b 100644 --- a/src/dial_service/dial_service.py +++ b/services/dial_service/src/dial_service/dial_service.py @@ -3,14 +3,7 @@ import traceback from typing import Any -from intersect_sdk import ( - IntersectBaseCapabilityImplementation, - IntersectCapabilityError, - intersect_message, - intersect_status, -) - -from dial_dataclass import ( +from intersect_dial_dataclass import ( DialDataResponse1D, DialDataResponse2D, DialInputMultiple, @@ -21,7 +14,13 @@ DialWorkflowDatasetUpdates, DialWorkflowFullState, ) -from dial_dataclass.pydantic_helpers import ValidatedObjectId +from intersect_dial_dataclass.pydantic_helpers import ValidatedObjectId +from intersect_sdk import ( + IntersectBaseCapabilityImplementation, + IntersectCapabilityError, + intersect_message, + intersect_status, +) from . import core from .mongo_handler import MongoDBCredentials, MongoDBHandler diff --git a/src/dial_service/logger.py b/services/dial_service/src/dial_service/logger.py similarity index 100% rename from src/dial_service/logger.py rename to services/dial_service/src/dial_service/logger.py diff --git a/src/dial_service/mongo_handler.py b/services/dial_service/src/dial_service/mongo_handler.py similarity index 96% rename from src/dial_service/mongo_handler.py rename to services/dial_service/src/dial_service/mongo_handler.py index 3f3a27e..e8d897c 100644 --- a/src/dial_service/mongo_handler.py +++ b/services/dial_service/src/dial_service/mongo_handler.py @@ -3,12 +3,14 @@ from typing import Any from bson import Binary +from intersect_dial_dataclass import ( + DialWorkflowDatasetUpdate, + DialWorkflowDatasetUpdates, +) +from intersect_dial_dataclass.pydantic_helpers import ValidatedObjectId from pymongo import MongoClient from pymongo.errors import PyMongoError -from dial_dataclass import DialWorkflowDatasetUpdate, DialWorkflowDatasetUpdates -from dial_dataclass.pydantic_helpers import ValidatedObjectId - from .logger import logger diff --git a/src/dial_service/serverside_data.py b/services/dial_service/src/dial_service/serverside_data.py similarity index 99% rename from src/dial_service/serverside_data.py rename to services/dial_service/src/dial_service/serverside_data.py index 0602da2..5729ee5 100644 --- a/src/dial_service/serverside_data.py +++ b/services/dial_service/src/dial_service/serverside_data.py @@ -1,8 +1,7 @@ from functools import cached_property import numpy as np - -from dial_dataclass import ( +from intersect_dial_dataclass import ( DialInputMultiple, DialInputPredictions, DialInputSingle, diff --git a/src/dial_service/service_specific_dataclasses.py b/services/dial_service/src/dial_service/service_specific_dataclasses.py similarity index 93% rename from src/dial_service/service_specific_dataclasses.py rename to services/dial_service/src/dial_service/service_specific_dataclasses.py index 4470014..fcd6e5f 100644 --- a/src/dial_service/service_specific_dataclasses.py +++ b/services/dial_service/src/dial_service/service_specific_dataclasses.py @@ -1,9 +1,11 @@ from typing import Annotated, Literal +from intersect_dial_dataclass.dial_dataclass import ( + _POSSIBLE_BACKENDS, + _DialWorkflowCreationParams, +) from pydantic import Field -from dial_dataclass.dial_dataclass import _POSSIBLE_BACKENDS, _DialWorkflowCreationParams - from .logger import logger diff --git a/src/dial_service/utilities/__init__.py b/services/dial_service/src/dial_service/utilities/__init__.py similarity index 100% rename from src/dial_service/utilities/__init__.py rename to services/dial_service/src/dial_service/utilities/__init__.py diff --git a/src/dial_service/utilities/strategies.py b/services/dial_service/src/dial_service/utilities/strategies.py similarity index 100% rename from src/dial_service/utilities/strategies.py rename to services/dial_service/src/dial_service/utilities/strategies.py diff --git a/tests/benchmarks/__init__.py b/tests/benchmarks/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/benchmarks/test_rosenbrock.py b/tests/benchmarks/test_rosenbrock.py index 690b556..d99438f 100644 --- a/tests/benchmarks/test_rosenbrock.py +++ b/tests/benchmarks/test_rosenbrock.py @@ -8,11 +8,6 @@ import numpy as np import pytest - -# from pytest_benchmark.fixture import BenchmarkFixture -from dial_dataclass import ( - DialInputSingleOtherStrategy, -) from dial_service import ( core as dial_core, ) @@ -22,6 +17,11 @@ ) from dial_service.service_specific_dataclasses import DialWorkflowCreationParamsService +# from pytest_benchmark.fixture import BenchmarkFixture +from intersect_dial_dataclass import ( + DialInputSingleOtherStrategy, +) + logger = logging.getLogger(__name__) MOCK_WORKFLOW_ID = '6984e6a6ef6e6290dabced91' @@ -78,7 +78,10 @@ def generate_initial_dataset() -> list[list[float]]: def run_simulation( - dataset_x: list[list[float]], dataset_y: list[float], strategy: str, strategy_args: object + dataset_x: list[list[float]], + dataset_y: list[float], + strategy: str, + strategy_args: object, ) -> None: # HYPERPARAMETERS LENGTH_SCALE = [0.2, 0.1] @@ -300,7 +303,8 @@ def positive_int_type(arg): # Run multiple iterations for statistical analysis NUM_RUNS = args.num_runs logger.info( - 'Running benchmarks with %d iterations per strategy using multiprocessing...', NUM_RUNS + 'Running benchmarks with %d iterations per strategy using multiprocessing...', + NUM_RUNS, ) def _run_single(task: tuple) -> tuple: @@ -315,7 +319,15 @@ def _run_single(task: tuple) -> tuple: iterations, target, ) - return (strategy_name, strategy, strategy_args, iterations, target, guess, history) + return ( + strategy_name, + strategy, + strategy_args, + iterations, + target, + guess, + history, + ) # Use the same dataset for each parameter we have datasets = [generate_initial_dataset() for _ in range(NUM_RUNS)] @@ -344,7 +356,15 @@ def _run_single(task: tuple) -> tuple: } for name, (s, sa) in zip(strategy_order, parameters, strict=True) } - for strategy_name, _strategy, _strategy_args, iterations, target, guess, history in run_outputs: + for ( + strategy_name, + _strategy, + _strategy_args, + iterations, + target, + guess, + history, + ) in run_outputs: raw[strategy_name]['iterations'].append(iterations) raw[strategy_name]['targets'].append(target) raw[strategy_name]['guesses'].append(guess) @@ -401,14 +421,21 @@ def _run_single(task: tuple) -> tuple: avg_iterations = [results[s]['avg_iterations'] for s in strategy_names] std_iterations = [results[s]['std_iterations'] for s in strategy_names] bars1 = ax1.bar( - range(len(strategy_names)), avg_iterations, yerr=std_iterations, capsize=5, alpha=0.7 + range(len(strategy_names)), + avg_iterations, + yerr=std_iterations, + capsize=5, + alpha=0.7, ) ax1.set_xlabel('Strategy') ax1.set_ylabel('Average Iterations') ax1.set_title('Iterations to Convergence (Lower is Better)') ax1.set_xticks(range(len(strategy_names))) ax1.set_xticklabels( - [s.replace(' ', '\n') for s in strategy_names], rotation=0, ha='center', fontsize=8 + [s.replace(' ', '\n') for s in strategy_names], + rotation=0, + ha='center', + fontsize=8, ) ax1.grid(axis='y', alpha=0.3) @@ -441,10 +468,16 @@ def _run_single(task: tuple) -> tuple: ax2.set_title('Final Target Value (Lower is Better)') ax2.set_xticks(range(len(strategy_names))) ax2.set_xticklabels( - [s.replace(' ', '\n') for s in strategy_names], rotation=0, ha='center', fontsize=8 + [s.replace(' ', '\n') for s in strategy_names], + rotation=0, + ha='center', + fontsize=8, ) ax2.axhline( - y=MAX_TARGET_Y, color='r', linestyle='--', label=f'Target Threshold ({MAX_TARGET_Y})' + y=MAX_TARGET_Y, + color='r', + linestyle='--', + label=f'Target Threshold ({MAX_TARGET_Y})', ) ax2.legend() ax2.grid(axis='y', alpha=0.3) @@ -472,7 +505,10 @@ def _run_single(task: tuple) -> tuple: ax3.set_title(f'Success Rate (Target ≤ {MAX_TARGET_Y})') ax3.set_xticks(range(len(strategy_names))) ax3.set_xticklabels( - [s.replace(' ', '\n') for s in strategy_names], rotation=0, ha='center', fontsize=8 + [s.replace(' ', '\n') for s in strategy_names], + rotation=0, + ha='center', + fontsize=8, ) ax3.set_ylim([0, 105]) ax3.grid(axis='y', alpha=0.3) @@ -755,7 +791,9 @@ def _run_single(task: tuple) -> tuple: result = results[strategy_name] logger.info('\n%s:', strategy_name) logger.info( - ' Avg Iterations: %.2f ± %.2f', result['avg_iterations'], result['std_iterations'] + ' Avg Iterations: %.2f ± %.2f', + result['avg_iterations'], + result['std_iterations'], ) logger.info(' Avg Target: %.4f ± %.4f', result['avg_target'], result['std_target']) logger.info(' Success Rate: %.1f%%', result['success_rate']) diff --git a/tests/benchmarks/test_strainmap.py b/tests/benchmarks/test_strainmap.py index 2bca51c..9cabf72 100644 --- a/tests/benchmarks/test_strainmap.py +++ b/tests/benchmarks/test_strainmap.py @@ -10,13 +10,6 @@ import numpy as np import pandas as pd import pytest -from scipy.interpolate import LinearNDInterpolator - -# from pytest_benchmark.fixture import BenchmarkFixture -from dial_dataclass import ( - DialInputPredictions, - DialInputSingleOtherStrategy, -) from dial_service import ( core as dial_core, ) @@ -27,6 +20,13 @@ ) from dial_service.service_specific_dataclasses import DialWorkflowCreationParamsService +# from pytest_benchmark.fixture import BenchmarkFixture +from intersect_dial_dataclass import ( + DialInputPredictions, + DialInputSingleOtherStrategy, +) +from scipy.interpolate import LinearNDInterpolator + logger = logging.getLogger(__name__) MOCK_WORKFLOW_ID = '6984e6a6ef6e6290dabced91' @@ -185,7 +185,10 @@ def strain_map(self, x) -> float: def run_simulation( - dataset_x: list[list[float]], dataset_y: list[float], strategy: str, strategy_args: object + dataset_x: list[list[float]], + dataset_y: list[float], + strategy: str, + strategy_args: object, ) -> tuple[np.ndarray, np.ndarray]: # important "Hyper-parameters" length_scale = 0.2 @@ -353,7 +356,11 @@ def accuracy_benchmark( total_rmse = np.sqrt(np.mean(mse)) print(iterations, total_rmse) - graph(np.sqrt(mse), dataset_x, f'{strategy}_{strategy_args.get("backend", "sklearn")}') + graph( + np.sqrt(mse), + dataset_x, + f'{strategy}_{strategy_args.get("backend", "sklearn")}', + ) if total_rmse <= TARGET_RMSE: break @@ -472,7 +479,11 @@ def positive_int_type(arg): targets_list.append(target) guesses_list.append(guess) logger.info( - ' Run %d/%d: iterations=%d, target=%.4f', run + 1, NUM_RUNS, iterations, target + ' Run %d/%d: iterations=%d, target=%.4f', + run + 1, + NUM_RUNS, + iterations, + target, ) results[strategy_name] = { @@ -501,14 +512,21 @@ def positive_int_type(arg): avg_iterations = [results[s]['avg_iterations'] for s in strategy_names] std_iterations = [results[s]['std_iterations'] for s in strategy_names] bars1 = ax1.bar( - range(len(strategy_names)), avg_iterations, yerr=std_iterations, capsize=5, alpha=0.7 + range(len(strategy_names)), + avg_iterations, + yerr=std_iterations, + capsize=5, + alpha=0.7, ) ax1.set_xlabel('Strategy') ax1.set_ylabel('Average Iterations') ax1.set_title('Iterations to Convergence (Lower is Better)') ax1.set_xticks(range(len(strategy_names))) ax1.set_xticklabels( - [s.replace(' ', '\n') for s in strategy_names], rotation=0, ha='center', fontsize=8 + [s.replace(' ', '\n') for s in strategy_names], + rotation=0, + ha='center', + fontsize=8, ) ax1.grid(axis='y', alpha=0.3) @@ -541,9 +559,17 @@ def positive_int_type(arg): ax2.set_title('Final Target Value (Lower is Better)') ax2.set_xticks(range(len(strategy_names))) ax2.set_xticklabels( - [s.replace(' ', '\n') for s in strategy_names], rotation=0, ha='center', fontsize=8 + [s.replace(' ', '\n') for s in strategy_names], + rotation=0, + ha='center', + fontsize=8, + ) + ax2.axhline( + y=TARGET_RMSE, + color='r', + linestyle='--', + label=f'Target Threshold ({TARGET_RMSE})', ) - ax2.axhline(y=TARGET_RMSE, color='r', linestyle='--', label=f'Target Threshold ({TARGET_RMSE})') ax2.legend() ax2.grid(axis='y', alpha=0.3) @@ -568,7 +594,10 @@ def positive_int_type(arg): ax3.set_title(f'Success Rate (Target ≤ {TARGET_RMSE})') ax3.set_xticks(range(len(strategy_names))) ax3.set_xticklabels( - [s.replace(' ', '\n') for s in strategy_names], rotation=0, ha='center', fontsize=8 + [s.replace(' ', '\n') for s in strategy_names], + rotation=0, + ha='center', + fontsize=8, ) ax3.set_ylim([0, 105]) ax3.grid(axis='y', alpha=0.3) @@ -589,7 +618,9 @@ def positive_int_type(arg): ax4 = axes[1, 1] iterations_data = [results[s]['iterations'] for s in strategy_names] bp = ax4.boxplot( - iterations_data, labels=[s.replace(' ', '\n') for s in strategy_names], patch_artist=True + iterations_data, + labels=[s.replace(' ', '\n') for s in strategy_names], + patch_artist=True, ) for patch in bp['boxes']: patch.set_facecolor('lightblue') @@ -829,7 +860,9 @@ def positive_int_type(arg): result = results[strategy_name] logger.info('\n%s:', strategy_name) logger.info( - ' Avg Iterations: %.2f ± %.2f', result['avg_iterations'], result['std_iterations'] + ' Avg Iterations: %.2f ± %.2f', + result['avg_iterations'], + result['std_iterations'], ) logger.info(' Avg Target: %.4f ± %.4f', result['avg_target'], result['std_target']) logger.info(' Success Rate: %.1f%%', result['success_rate']) diff --git a/tests/unit/test_internals.py b/tests/unit/test_internals.py index a84d894..8119b7a 100644 --- a/tests/unit/test_internals.py +++ b/tests/unit/test_internals.py @@ -4,12 +4,6 @@ import numpy as np import pytest from bson import ObjectId - -from dial_dataclass import ( - DialInputMultiple, - DialInputPredictions, - DialInputSingleOtherStrategy, -) from dial_service import core from dial_service.serverside_data import ( ServersideInputMultiple, @@ -19,6 +13,11 @@ from dial_service.service_specific_dataclasses import ( DialWorkflowCreationParamsService, ) +from intersect_dial_dataclass import ( + DialInputMultiple, + DialInputPredictions, + DialInputSingleOtherStrategy, +) DUMMY_WORKFLOW_ID = str(ObjectId()) """This is used so that we can run the tests without connecting to a backend database or skipping validation for the rest of the data.""" diff --git a/uv.lock b/uv.lock index 0e595b0..06f1f86 100644 --- a/uv.lock +++ b/uv.lock @@ -12,6 +12,28 @@ resolution-markers = [ "python_full_version < '3.11'", ] +[manifest] +members = [ + "dial-service", + "intersect-dial-dataclass", +] + +[manifest.dependency-groups] +dev = [ + { name = "httpretty", specifier = ">=1.1.4" }, + { name = "matplotlib", specifier = ">=3.8.2,<4.0.0" }, + { name = "mypy", specifier = ">=1.10.0" }, + { name = "pre-commit", specifier = ">=3.3.1" }, + { name = "pytest", specifier = ">=7.3.2" }, + { name = "pytest-cov", specifier = ">=4.1.0" }, + { name = "ruff", specifier = "==0.9.4" }, + { name = "statsmodels", specifier = ">=0.14.4" }, +] +docs = [ + { name = "furo", specifier = ">=2023.3.27" }, + { name = "sphinx", specifier = ">=5.3.0" }, +] + [[package]] name = "absl-py" version = "2.4.0" @@ -655,12 +677,13 @@ wheels = [ ] [[package]] -name = "dial" +name = "dial-service" version = "0.1.6" -source = { editable = "." } +source = { editable = "services/dial_service" } dependencies = [ { name = "gpax", version = "0.1.8", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.13'" }, { name = "gpax", version = "0.1.9", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.13'" }, + { name = "intersect-dial-dataclass" }, { name = "intersect-sdk" }, { name = "numpy", version = "2.2.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, { name = "numpy", version = "2.4.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, @@ -673,30 +696,10 @@ dependencies = [ { name = "scipy", version = "1.17.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, ] -[package.optional-dependencies] -docs = [ - { name = "furo" }, - { name = "sphinx", version = "8.1.3", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, - { name = "sphinx", version = "9.0.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version == '3.11.*'" }, - { name = "sphinx", version = "9.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" }, -] - -[package.dev-dependencies] -dev = [ - { name = "httpretty" }, - { name = "matplotlib" }, - { name = "mypy" }, - { name = "pre-commit" }, - { name = "pytest" }, - { name = "pytest-cov" }, - { name = "ruff" }, - { name = "statsmodels" }, -] - [package.metadata] requires-dist = [ - { name = "furo", marker = "extra == 'docs'", specifier = ">=2023.3.27" }, { name = "gpax", specifier = ">=0.1.8" }, + { name = "intersect-dial-dataclass", editable = "packages/intersect_dial_dataclass" }, { name = "intersect-sdk", specifier = ">=0.9.3,<0.10.0" }, { name = "numpy" }, { name = "numpyro", specifier = "<0.20.1" }, @@ -704,20 +707,6 @@ requires-dist = [ { name = "sable", git = "https://code.ornl.gov/sable/sable.git" }, { name = "scikit-learn", specifier = ">=1.4.0,<2.0.0" }, { name = "scipy", specifier = ">=1.12.0,<2.0.0" }, - { name = "sphinx", marker = "extra == 'docs'", specifier = ">=5.3.0" }, -] -provides-extras = ["docs"] - -[package.metadata.requires-dev] -dev = [ - { name = "httpretty", specifier = ">=1.1.4" }, - { name = "matplotlib", specifier = ">=3.8.2,<4.0.0" }, - { name = "mypy", specifier = ">=1.10.0" }, - { name = "pre-commit", specifier = ">=3.3.1" }, - { name = "pytest", specifier = ">=7.3.2" }, - { name = "pytest-cov", specifier = ">=4.1.0" }, - { name = "ruff", specifier = "==0.9.4" }, - { name = 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deletion(-) diff --git a/.github/workflows/pypi-release.yml b/.github/workflows/pypi-release.yml index 7a98135..bb244b7 100644 --- a/.github/workflows/pypi-release.yml +++ b/.github/workflows/pypi-release.yml @@ -26,7 +26,7 @@ jobs: run: uv build --no-create-gitignore packages/intersect_dial_dataclass - name: Publish package to PyPI # if dial_dataclass and dial_service have different versions, then don't try to publish it to PyPI - run: if [ $(python -c 'from importlib.metadata import version; print(version("intersect_dial_dataclass") == version("dial_service"))') == 'True' ]; then uv publish; fi + run: if [[ $(python -c 'from importlib.metadata import version; print(version("intersect_dial_dataclass") == version("dial_service"))') == 'True' ]]; then uv publish; fi - name: upload to github release uses: docker://antonyurchenko/git-release:v5 env: From 3f89f4dd5d3ee6bd265e27c2ddc5d32151a41139 Mon Sep 17 00:00:00 2001 From: Lance-Drane Date: Mon, 27 Jul 2026 20:33:36 -0400 Subject: [PATCH 3/6] avoid bashism in CI/CD Signed-off-by: Lance-Drane --- .github/workflows/pypi-release.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/pypi-release.yml b/.github/workflows/pypi-release.yml index bb244b7..7068519 100644 --- a/.github/workflows/pypi-release.yml +++ b/.github/workflows/pypi-release.yml @@ -26,7 +26,7 @@ jobs: run: uv build --no-create-gitignore packages/intersect_dial_dataclass - name: Publish package to PyPI # if dial_dataclass and dial_service have different versions, then don't try to publish it to PyPI - run: if [[ $(python -c 'from importlib.metadata import version; print(version("intersect_dial_dataclass") == version("dial_service"))') == 'True' ]]; then uv publish; fi + run: if [ $(python -c 'from importlib.metadata import version; print(version("intersect_dial_dataclass") == version("dial_service"))') = 'True' ]; then uv publish; fi - name: upload to github release uses: docker://antonyurchenko/git-release:v5 env: 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b/packages/intersect_dial_dataclass/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "intersect-dial-dataclass" -version = "0.1.6" +version = "0.1.7" authors = [ { name = "Stephen DeWitt", email = "dewittsj@ornl.gov" }, { name = "Lance Drane", email = "dranelt@ornl.gov" }, @@ -16,9 +16,7 @@ requires-python = ">=3.10" keywords = ["active learning", "dataclass"] license = { text = "BSD-3-Clause" } classifiers = ["Programming Language :: Python :: 3"] -dependencies = [ - "pydantic>=2.13.0", -] +dependencies = ["pydantic>=2.13.0"] [project.urls] Homepage = "https://github.com/INTERSECT-DIAL/dial/" diff --git a/services/dial_service/pyproject.toml b/services/dial_service/pyproject.toml index 4e190ed..8dc4d29 100644 --- a/services/dial_service/pyproject.toml +++ b/services/dial_service/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "dial_service" -version = "0.1.6" +version = "0.1.7" authors = [ { name = "Stephen DeWitt", email = "dewittsj@ornl.gov" }, { name = "Lance Drane", email = "dranelt@ornl.gov" }, From 252f453464618ec698a1c24c5544390070b13a97 Mon Sep 17 00:00:00 2001 From: Lance-Drane Date: Tue, 28 Jul 2026 12:05:32 -0400 Subject: [PATCH 6/6] CI/CD: conditionally publish to Github Releases in addition to PyPI Signed-off-by: Lance-Drane --- .github/workflows/pypi-release.yml | 12 +++++++++--- 1 file changed, 9 insertions(+), 3 deletions(-) diff --git a/.github/workflows/pypi-release.yml b/.github/workflows/pypi-release.yml index 7068519..636a5bc 100644 --- a/.github/workflows/pypi-release.yml +++ b/.github/workflows/pypi-release.yml @@ -7,7 +7,7 @@ on: workflow_dispatch: jobs: - build: + build-and-publish: if: startsWith(github.ref, 'refs/tags/') runs-on: ubuntu-latest permissions: @@ -22,12 +22,18 @@ jobs: uses: astral-sh/setup-uv@v7 with: python-version: "3.12" + # if the output of check_needs_publish is not "True" (only happens if dial_dataclass and dial_service have the same versions), do not try to publish to PyPI or Github Releases + - name: "Check if package should be published" + id: "check_needs_publish" + run: echo "match=$(python -c 'from importlib.metadata import version; print(version("intersect_dial_dataclass") == version("dial_service"))')" >> "$GITHUB_OUTPUT" - name: "Build package" + if: ${{ steps.check_needs_publish.outputs.match == 'True' }} run: uv build --no-create-gitignore packages/intersect_dial_dataclass - name: Publish package to PyPI - # if dial_dataclass and dial_service have different versions, then don't try to publish it to PyPI - run: if [ $(python -c 'from importlib.metadata import version; print(version("intersect_dial_dataclass") == version("dial_service"))') = 'True' ]; then uv publish; fi + if: ${{ steps.check_needs_publish.outputs.match == 'True' }} + run: uv publish - name: upload to github release + if: ${{ steps.check_needs_publish.outputs.match == 'True' }} uses: docker://antonyurchenko/git-release:v5 env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}