docs: document CLI install/update commands and fix installer issues#296
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Move CLI-INSTALL-PROPOSE.md and PLAN-CLI-INSTALL.md to completed/ now that both PR-I1 (install) and PR-I2 (update) are implemented. Update README.md and JAVA-CODEBASE-RAG-CLI.md to document the new interactive setup wizard (java-codebase-rag install) and the post-upgrade refresh command (java-codebase-rag update). Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
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Summary
completed/now that both PR-I1 (install) and PR-I2 (update) are implementedinstallandupdatecommandsverbose/quietargs torun_build_ast_graphcallTest plan
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