From 13ab0e3d6e5d9525e1b53d439e0281a2e265acf1 Mon Sep 17 00:00:00 2001 From: HelenaLC Date: Thu, 28 May 2026 09:38:40 +0200 Subject: [PATCH 1/2] drop labels generic --- R/AllGenerics.R | 1 - 1 file changed, 1 deletion(-) diff --git a/R/AllGenerics.R b/R/AllGenerics.R index ae792eec..1ab28674 100644 --- a/R/AllGenerics.R +++ b/R/AllGenerics.R @@ -8,7 +8,6 @@ setGeneric("point", \(x, ...) standardGeneric("point")) # get all ---- setGeneric("images", \(x, ...) standardGeneric("images")) -setGeneric("labels", \(object, ...) standardGeneric("labels")) setGeneric("shapes", \(x, ...) standardGeneric("shapes")) setGeneric("points", \(x, ...) standardGeneric("points")) setGeneric("tables", \(x, ...) standardGeneric("tables")) From c1a12e1ca5081b29b27bc06ab84ff94e96de6f1b Mon Sep 17 00:00:00 2001 From: HelenaLC Date: Thu, 28 May 2026 09:47:30 +0200 Subject: [PATCH 2/2] use base::transform --- NAMESPACE | 1 - R/trans.R | 1 - 2 files changed, 2 deletions(-) diff --git a/NAMESPACE b/NAMESPACE index f22eb4a2..1643cccc 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -134,7 +134,6 @@ importFrom(S4Vectors,isSequence) importFrom(S4Vectors,make_zero_col_DFrame) importFrom(S4Vectors,metadata) importFrom(S4Vectors,setValidity2) -importFrom(S4Vectors,transform) importFrom(SingleCellExperiment,"int_colData<-") importFrom(SingleCellExperiment,"int_metadata<-") importFrom(SingleCellExperiment,SingleCellExperiment) diff --git a/R/trans.R b/R/trans.R index d26a8e49..912c5bc0 100644 --- a/R/trans.R +++ b/R/trans.R @@ -50,7 +50,6 @@ NULL #' @export #' @rdname trans -#' @importFrom S4Vectors transform setMethod("transform", "SpatialDataElement", \(`_data`, i=1, ...) { stopifnot( length(i) == 1, is.character(i) |