From 9937bd516ad7facca628a457ca9f0de96b76d809 Mon Sep 17 00:00:00 2001 From: Artur-man Date: Thu, 29 Jan 2026 15:43:39 +0100 Subject: [PATCH 1/4] add new GHA runners --- .github/workflows/check-bioc.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index 996b6f31..1acb0554 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -53,8 +53,8 @@ jobs: matrix: config: - { os: ubuntu-latest, r: '4.5', bioc: 'devel', cont: "bioconductor/bioconductor_docker:devel", rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" } -# - { os: macOS-latest, r: '4.5', bioc: 'devel'} -# - { os: windows-latest, r: '4.5', bioc: 'devel'} + - { os: macOS-latest, r: '4.5', bioc: 'devel'} + - { os: windows-latest, r: '4.5', bioc: 'devel'} ## Check https://github.com/r-lib/actions/tree/master/examples ## for examples using the http-user-agent env: From 3b1de05239e78b2b86004b8fdd3e0f2e0968a36a Mon Sep 17 00:00:00 2001 From: Artur-man Date: Thu, 29 Jan 2026 15:47:06 +0100 Subject: [PATCH 2/4] update r version --- .github/workflows/check-bioc.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index 1acb0554..1923617c 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -52,9 +52,9 @@ jobs: fail-fast: false matrix: config: - - { os: ubuntu-latest, r: '4.5', bioc: 'devel', cont: "bioconductor/bioconductor_docker:devel", rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" } - - { os: macOS-latest, r: '4.5', bioc: 'devel'} - - { os: windows-latest, r: '4.5', bioc: 'devel'} + - { os: ubuntu-latest, r: '4.6', bioc: 'devel', cont: "bioconductor/bioconductor_docker:devel", rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" } + - { os: macOS-latest, r: '4.6', bioc: 'devel'} + - { os: windows-latest, r: '4.6', bioc: 'devel'} ## Check https://github.com/r-lib/actions/tree/master/examples ## for examples using the http-user-agent env: From dd159cb2ebe80b56cb87c3fe296e00319adac695 Mon Sep 17 00:00:00 2001 From: Artur-man Date: Thu, 29 Jan 2026 15:51:20 +0100 Subject: [PATCH 3/4] r version --- .github/workflows/check-bioc.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index 1923617c..d1378fd9 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -53,8 +53,8 @@ jobs: matrix: config: - { os: ubuntu-latest, r: '4.6', bioc: 'devel', cont: "bioconductor/bioconductor_docker:devel", rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" } - - { os: macOS-latest, r: '4.6', bioc: 'devel'} - - { os: windows-latest, r: '4.6', bioc: 'devel'} + - { os: macOS-latest, r: 'devel', bioc: 'devel'} + - { os: windows-latest, r: 'devel', bioc: 'devel'} ## Check https://github.com/r-lib/actions/tree/master/examples ## for examples using the http-user-agent env: From 3758cb7419049bd10b3ff677a53c1cef028f8eda Mon Sep 17 00:00:00 2001 From: Artur-man Date: Sun, 29 Mar 2026 00:22:13 +0100 Subject: [PATCH 4/4] add release GHA runner --- .github/workflows/check-bioc.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index e36c8c84..b3830dc5 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -52,6 +52,7 @@ jobs: fail-fast: false matrix: config: + - { os: ubuntu-latest, r: '4.5', bioc: '3.22', cont: "bioconductor/bioconductor_docker:RELEASE_3_22", rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" } - { os: ubuntu-latest, r: '4.6', bioc: 'devel', cont: "bioconductor/bioconductor_docker:devel", rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" } - { os: macOS-latest, r: 'devel', bioc: 'devel'} - { os: windows-latest, r: 'devel', bioc: 'devel'}