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R-CMD-check-bioc

R-CMD-check-bioc #651

Triggered via push July 5, 2026 16:02
Status Failure
Total duration 1h 37m 3s
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check-bioc.yml

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Matrix: build-check
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3 errors, 39 warnings, and 1 notice
ubuntu-latest (devel)
Process completed with exit code 1.
macOS-latest (devel)
Process completed with exit code 1.
macOS-latest (devel)
Build process failed
ubuntu-latest (devel)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/cache@v3, actions/checkout@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
ubuntu-latest (devel)
No files were found with the provided path: check. No artifacts will be uploaded.
macOS-latest (devel)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/cache@v3, actions/checkout@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (devel)
No files were found with the provided path: check. No artifacts will be uploaded.
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/books/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/books/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/books/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
The following taps are not trusted: aws/tap Homebrew is currently ignoring formulae, casks and commands from these taps because tap trust is required. Untap them with: brew untap aws/tap Trust specific formulae, casks and commands with: brew trust --formula <user>/<tap>/<formula> brew trust --cask <user>/<tap>/<cask> brew trust --command <user>/<tap>/<command> Whole-tap trust is broader and includes all current and future formulae, casks and commands from the listed taps. Trust whole taps with: brew trust aws/tap To disable trust checks: export HOMEBREW_NO_REQUIRE_TAP_TRUST=1 This is not recommended and will be removed in a later release. For more information, see: https://docs.brew.sh/Tap-Trust
macOS-latest (devel)
The following taps are not trusted: aws/tap Homebrew is currently ignoring formulae, casks and commands from these taps because tap trust is required. Untap them with: brew untap aws/tap Trust specific formulae, casks and commands with: brew trust --formula <user>/<tap>/<formula> brew trust --cask <user>/<tap>/<cask> brew trust --command <user>/<tap>/<command> Whole-tap trust is broader and includes all current and future formulae, casks and commands from the listed taps. Trust whole taps with: brew trust aws/tap To disable trust checks: export HOMEBREW_NO_REQUIRE_TAP_TRUST=1 This is not recommended and will be removed in a later release. For more information, see: https://docs.brew.sh/Tap-Trust
macOS-latest (devel)
The following taps are not trusted: aws/tap Homebrew is currently ignoring formulae, casks and commands from these taps because tap trust is required. Untap them with: brew untap aws/tap Trust specific formulae, casks and commands with: brew trust --formula <user>/<tap>/<formula> brew trust --cask <user>/<tap>/<cask> brew trust --command <user>/<tap>/<command> Whole-tap trust is broader and includes all current and future formulae, casks and commands from the listed taps. Trust whole taps with: brew trust aws/tap To disable trust checks: export HOMEBREW_NO_REQUIRE_TAP_TRUST=1 This is not recommended and will be removed in a later release. For more information, see: https://docs.brew.sh/Tap-Trust
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
The macos-latest label will migrate to macOS 26 beginning June 15, 2026. For more information see https://github.com/actions/runner-images/issues/14167