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Bioc revisions #119

Triggered via pull request July 5, 2026 15:40
Status Failure
Total duration 12m 12s
Artifacts 10

r-universe.yaml

on: pull_request
R-universe testing  /  Build source pkg and vignettes
5m 14s
R-universe testing / Build source pkg and vignettes
R-universe testing  /  Build rOpenSci docs site
R-universe testing / Build rOpenSci docs site
R-universe testing  /  Bioconductor Checks
3m 34s
R-universe testing / Bioconductor Checks
Matrix: R-universe testing / linux
Matrix: R-universe testing / macos
Matrix: R-universe testing / wasm
Matrix: R-universe testing / windows
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7 errors
R-universe testing / Build R-release for MacOS: spatialdataR#L0
Check: tests, Result: ERROR Running ‘testthat.R’ [30s/30s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: [ FAIL 1 | WARN 2 | SKIP 0 | PASS 1269 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-methods.R:122:17'): set all ──────────────────────────────────── Error in `.local(x, i, ..., value)`: invalid 'i'; should be an integer scalar in [1,5], or one of: ‘images’,‘labels’,‘points’,‘shapes’,‘tables’ Backtrace: ▆ 1. ├─methods (local) `[[<-`(`*tmp*`, match(., .LAYERS), value = `<sdImgLst>`) at test-methods.R:122:17 2. └─spatialdataR (local) `[[<-`(`*tmp*`, match(., .LAYERS), value = `<sdImgLst>`) 3. └─spatialdataR (local) .local(x, i, ..., value) [ FAIL 1 | WARN 2 | SKIP 0 | PASS 1269 ] Error: ! Test failures. Execution halted
R-universe testing / Build R-oldrel for MacOS: spatialdataR#L0
Check: tests, Result: ERROR Running ‘testthat.R’ [32s/32s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: [ FAIL 1 | WARN 2 | SKIP 0 | PASS 1269 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-methods.R:122:17'): set all ──────────────────────────────────── Error in `.local(x, i, ..., value)`: invalid 'i'; should be an integer scalar in [1,5], or one of: ‘images’,‘labels’,‘points’,‘shapes’,‘tables’ Backtrace: ▆ 1. ├─methods (local) `[[<-`(`*tmp*`, match(., .LAYERS), value = `<sdImgLst>`) at test-methods.R:122:17 2. └─spatialdataR (local) `[[<-`(`*tmp*`, match(., .LAYERS), value = `<sdImgLst>`) 3. └─spatialdataR (local) .local(x, i, ..., value) [ FAIL 1 | WARN 2 | SKIP 0 | PASS 1269 ] Error: ! Test failures. Execution halted
R-universe testing / Build R-devel for Windows: spatialdataR#L0
Check: tests, Result: ERROR Running 'testthat.R' [67s] Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: [ FAIL 1 | WARN 10 | SKIP 0 | PASS 1269 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-methods.R:122:17'): set all ──────────────────────────────────── Error in `.local(x, i, ..., value)`: invalid 'i'; should be an integer scalar in [1,5], or one of: 'images','labels','points','shapes','tables' Backtrace: ▆ 1. ├─methods (local) `[[<-`(`*tmp*`, match(., .LAYERS), value = `<sdImgLst>`) at test-methods.R:122:17 2. └─spatialdataR (local) `[[<-`(`*tmp*`, match(., .LAYERS), value = `<sdImgLst>`) 3. └─spatialdataR (local) .local(x, i, ..., value) [ FAIL 1 | WARN 10 | SKIP 0 | PASS 1269 ] Error: ! Test failures. Execution halted
R-universe testing / Build R-release for Windows: spatialdataR#L0
Check: tests, Result: ERROR Running 'testthat.R' [64s] Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: [ FAIL 1 | WARN 2 | SKIP 0 | PASS 1269 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-methods.R:122:17'): set all ──────────────────────────────────── Error in `.local(x, i, ..., value)`: invalid 'i'; should be an integer scalar in [1,5], or one of: 'images','labels','points','shapes','tables' Backtrace: ▆ 1. ├─methods (local) `[[<-`(`*tmp*`, match(., .LAYERS), value = `<sdImgLst>`) at test-methods.R:122:17 2. └─spatialdataR (local) `[[<-`(`*tmp*`, match(., .LAYERS), value = `<sdImgLst>`) 3. └─spatialdataR (local) .local(x, i, ..., value) [ FAIL 1 | WARN 2 | SKIP 0 | PASS 1269 ] Error: ! Test failures. Execution halted
R-universe testing / Build R-oldrel for Windows: spatialdataR#L0
Check: tests, Result: ERROR Running 'testthat.R' [70s] Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: [ FAIL 1 | WARN 2 | SKIP 0 | PASS 1269 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-methods.R:122:17'): set all ──────────────────────────────────── Error in `.local(x, i, ..., value)`: invalid 'i'; should be an integer scalar in [1,5], or one of: 'images','labels','points','shapes','tables' Backtrace: ▆ 1. ├─methods (local) `[[<-`(`*tmp*`, match(., .LAYERS), value = `<sdImgLst>`) at test-methods.R:122:17 2. └─spatialdataR (local) `[[<-`(`*tmp*`, match(., .LAYERS), value = `<sdImgLst>`) 3. └─spatialdataR (local) .local(x, i, ..., value) [ FAIL 1 | WARN 2 | SKIP 0 | PASS 1269 ] Error: ! Test failures. Execution halted
R-universe testing / Build R-release for Linux: spatialdataR#L0
Check: tests, Result: ERROR Running ‘testthat.R’ [61s/59s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: [ FAIL 1 | WARN 2 | SKIP 0 | PASS 1269 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-methods.R:122:17'): set all ──────────────────────────────────── Error in `.local(x, i, ..., value)`: invalid 'i'; should be an integer scalar in [1,5], or one of: ‘images’,‘labels’,‘points’,‘shapes’,‘tables’ Backtrace: ▆ 1. ├─methods (local) `[[<-`(`*tmp*`, match(., .LAYERS), value = `<sdImgLst>`) at test-methods.R:122:17 2. └─spatialdataR (local) `[[<-`(`*tmp*`, match(., .LAYERS), value = `<sdImgLst>`) 3. └─spatialdataR (local) .local(x, i, ..., value) [ FAIL 1 | WARN 2 | SKIP 0 | PASS 1269 ] Error: ! Test failures. Execution halted
R-universe testing / Build R-devel for Linux: spatialdataR#L0
Check: tests, Result: ERROR Running ‘testthat.R’ [61s/59s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: [ FAIL 1 | WARN 10 | SKIP 0 | PASS 1269 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-methods.R:122:17'): set all ──────────────────────────────────── Error in `.local(x, i, ..., value)`: invalid 'i'; should be an integer scalar in [1,5], or one of: ‘images’,‘labels’,‘points’,‘shapes’,‘tables’ Backtrace: ▆ 1. ├─methods (local) `[[<-`(`*tmp*`, match(., .LAYERS), value = `<sdImgLst>`) at test-methods.R:122:17 2. └─spatialdataR (local) `[[<-`(`*tmp*`, match(., .LAYERS), value = `<sdImgLst>`) 3. └─spatialdataR (local) .local(x, i, ..., value) [ FAIL 1 | WARN 10 | SKIP 0 | PASS 1269 ] Error: ! Test failures. Execution halted

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