Skip to content

teststeststests

teststeststests #97

Triggered via pull request June 5, 2026 19:12
@HelenaLCHelenaLC
synchronize #235
tests
Status Failure
Total duration 12m 39s
Artifacts 10

r-universe.yaml

on: pull_request
R-universe testing  /  Build source pkg and vignettes
5m 44s
R-universe testing / Build source pkg and vignettes
R-universe testing  /  Build rOpenSci docs site
R-universe testing / Build rOpenSci docs site
R-universe testing  /  Bioconductor Checks
3m 26s
R-universe testing / Bioconductor Checks
Matrix: R-universe testing / linux
Matrix: R-universe testing / macos
Matrix: R-universe testing / wasm
Matrix: R-universe testing / windows
Fit to window
Zoom out
Zoom in

Annotations

7 errors and 3 notices
R-universe testing / Build R-oldrel for MacOS: spatialdataR#L0
Check: examples, Result: ERROR Running examples in ‘spatialdataR-Ex.R’ failed The error most likely occurred in: > ### Name: centroids > ### Title: Spatial element centroids > ### Aliases: centroids centroids,ANY-method > ### centroids,SpatialDataLabel-method centroids,SpatialDataShape-method > ### centroids,SpatialDataPoint-method > > ### ** Examples > > x <- file.path("extdata", "blobs.zarr") > x <- system.file(x, package="spatialdataR") > x <- readSpatialData(x, tables=FALSE) > > centroids(label(x)) Error: unable to find an inherited method for function ‘axes’ for signature ‘x = "ZarrMatrix"’ Execution halted Check: tests, Result: ERROR Running ‘testthat.R’ [36s/36s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ── Error ('test-utils.R:16:5'): centroids,sdLabel ────────────────────────────── Error: unable to find an inherited method for function 'axes' for signature 'x = "ZarrMatrix"' Backtrace: ▆ 1. ├─spatialdataR::centroids(y, "data.frame") at test-utils.R:16:5 2. └─spatialdataR::centroids(y, "data.frame") 3. └─spatialdataR (local) .local(x, ...) 4. └─spatialdataR:::.get_space_ax(y) 5. └─spatialdataR::axes(x, "name") 6. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1288 ] Error: ! Test failures. Execution halted
R-universe testing / Build R-release for MacOS: spatialdataR#L0
Check: examples, Result: ERROR Running examples in ‘spatialdataR-Ex.R’ failed The error most likely occurred in: > ### Name: centroids > ### Title: Spatial element centroids > ### Aliases: centroids centroids,ANY-method > ### centroids,SpatialDataLabel-method centroids,SpatialDataShape-method > ### centroids,SpatialDataPoint-method > > ### ** Examples > > x <- file.path("extdata", "blobs.zarr") > x <- system.file(x, package="spatialdataR") > x <- readSpatialData(x, tables=FALSE) > > centroids(label(x)) Error: unable to find an inherited method for function ‘axes’ for signature ‘x = "ZarrMatrix"’ Execution halted Check: tests, Result: ERROR Running ‘testthat.R’ [37s/37s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ── Error ('test-utils.R:16:5'): centroids,sdLabel ────────────────────────────── Error: unable to find an inherited method for function 'axes' for signature 'x = "ZarrMatrix"' Backtrace: ▆ 1. ├─spatialdataR::centroids(y, "data.frame") at test-utils.R:16:5 2. └─spatialdataR::centroids(y, "data.frame") 3. └─spatialdataR (local) .local(x, ...) 4. └─spatialdataR:::.get_space_ax(y) 5. └─spatialdataR::axes(x, "name") 6. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1288 ] Error: ! Test failures. Execution halted
R-universe testing / Build R-devel for Windows: spatialdataR#L0
Check: examples, Result: ERROR Running examples in 'spatialdataR-Ex.R' failed The error most likely occurred in: > ### Name: centroids > ### Title: Spatial element centroids > ### Aliases: centroids centroids,ANY-method > ### centroids,SpatialDataLabel-method centroids,SpatialDataShape-method > ### centroids,SpatialDataPoint-method > > ### ** Examples > > x <- file.path("extdata", "blobs.zarr") > x <- system.file(x, package="spatialdataR") > x <- readSpatialData(x, tables=FALSE) > > centroids(label(x)) Error: unable to find an inherited method for function 'axes' for signature 'x = "ZarrMatrix"' Execution halted Check: tests, Result: ERROR Running 'testthat.R' [69s] Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: ── Error ('test-utils.R:16:5'): centroids,sdLabel ────────────────────────────── Error: unable to find an inherited method for function 'axes' for signature 'x = "ZarrMatrix"' Backtrace: ▆ 1. ├─spatialdataR::centroids(y, "data.frame") at test-utils.R:16:5 2. └─spatialdataR::centroids(y, "data.frame") 3. └─spatialdataR (local) .local(x, ...) 4. └─spatialdataR:::.get_space_ax(y) 5. └─spatialdataR::axes(x, "name") 6. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`) [ FAIL 1 | WARN 8 | SKIP 0 | PASS 1288 ] Error: ! Test failures. Execution halted
R-universe testing / Build R-release for Windows: spatialdataR#L0
Check: examples, Result: ERROR Running examples in 'spatialdataR-Ex.R' failed The error most likely occurred in: > ### Name: centroids > ### Title: Spatial element centroids > ### Aliases: centroids centroids,ANY-method > ### centroids,SpatialDataLabel-method centroids,SpatialDataShape-method > ### centroids,SpatialDataPoint-method > > ### ** Examples > > x <- file.path("extdata", "blobs.zarr") > x <- system.file(x, package="spatialdataR") > x <- readSpatialData(x, tables=FALSE) > > centroids(label(x)) Error: unable to find an inherited method for function 'axes' for signature 'x = "ZarrMatrix"' Execution halted Check: tests, Result: ERROR Running 'testthat.R' [73s] Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: ── Error ('test-utils.R:16:5'): centroids,sdLabel ────────────────────────────── Error: unable to find an inherited method for function 'axes' for signature 'x = "ZarrMatrix"' Backtrace: ▆ 1. ├─spatialdataR::centroids(y, "data.frame") at test-utils.R:16:5 2. └─spatialdataR::centroids(y, "data.frame") 3. └─spatialdataR (local) .local(x, ...) 4. └─spatialdataR:::.get_space_ax(y) 5. └─spatialdataR::axes(x, "name") 6. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1288 ] Error: ! Test failures. Execution halted
R-universe testing / Build R-oldrel for Windows: spatialdataR#L0
Check: examples, Result: ERROR Running examples in 'spatialdataR-Ex.R' failed The error most likely occurred in: > ### Name: centroids > ### Title: Spatial element centroids > ### Aliases: centroids centroids,ANY-method > ### centroids,SpatialDataLabel-method centroids,SpatialDataShape-method > ### centroids,SpatialDataPoint-method > > ### ** Examples > > x <- file.path("extdata", "blobs.zarr") > x <- system.file(x, package="spatialdataR") > x <- readSpatialData(x, tables=FALSE) > > centroids(label(x)) Error: unable to find an inherited method for function 'axes' for signature 'x = "ZarrMatrix"' Execution halted Check: tests, Result: ERROR Running 'testthat.R' [69s] Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: ── Error ('test-utils.R:16:5'): centroids,sdLabel ────────────────────────────── Error: unable to find an inherited method for function 'axes' for signature 'x = "ZarrMatrix"' Backtrace: ▆ 1. ├─spatialdataR::centroids(y, "data.frame") at test-utils.R:16:5 2. └─spatialdataR::centroids(y, "data.frame") 3. └─spatialdataR (local) .local(x, ...) 4. └─spatialdataR:::.get_space_ax(y) 5. └─spatialdataR::axes(x, "name") 6. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1288 ] Error: ! Test failures. Execution halted
R-universe testing / Build R-release for Linux: spatialdataR#L0
Check: examples, Result: ERROR Running examples in ‘spatialdataR-Ex.R’ failed The error most likely occurred in: > ### Name: centroids > ### Title: Spatial element centroids > ### Aliases: centroids centroids,ANY-method > ### centroids,SpatialDataLabel-method centroids,SpatialDataShape-method > ### centroids,SpatialDataPoint-method > > ### ** Examples > > x <- file.path("extdata", "blobs.zarr") > x <- system.file(x, package="spatialdataR") > x <- readSpatialData(x, tables=FALSE) > > centroids(label(x)) Error: unable to find an inherited method for function ‘axes’ for signature ‘x = "ZarrMatrix"’ Execution halted Check: tests, Result: ERROR Running ‘testthat.R’ [64s/62s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ── Error ('test-utils.R:16:5'): centroids,sdLabel ────────────────────────────── Error: unable to find an inherited method for function 'axes' for signature 'x = "ZarrMatrix"' Backtrace: ▆ 1. ├─spatialdataR::centroids(y, "data.frame") at test-utils.R:16:5 2. └─spatialdataR::centroids(y, "data.frame") 3. └─spatialdataR (local) .local(x, ...) 4. └─spatialdataR:::.get_space_ax(y) 5. └─spatialdataR::axes(x, "name") 6. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1288 ] Error: ! Test failures. Execution halted
R-universe testing / Build R-devel for Linux: spatialdataR#L0
Check: examples, Result: ERROR Running examples in ‘spatialdataR-Ex.R’ failed The error most likely occurred in: > ### Name: centroids > ### Title: Spatial element centroids > ### Aliases: centroids centroids,ANY-method > ### centroids,SpatialDataLabel-method centroids,SpatialDataShape-method > ### centroids,SpatialDataPoint-method > > ### ** Examples > > x <- file.path("extdata", "blobs.zarr") > x <- system.file(x, package="spatialdataR") > x <- readSpatialData(x, tables=FALSE) > > centroids(label(x)) Error: unable to find an inherited method for function ‘axes’ for signature ‘x = "ZarrMatrix"’ Execution halted Check: tests, Result: ERROR Running ‘testthat.R’ [72s/70s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ── Error ('test-utils.R:16:5'): centroids,sdLabel ────────────────────────────── Error: unable to find an inherited method for function 'axes' for signature 'x = "ZarrMatrix"' Backtrace: ▆ 1. ├─spatialdataR::centroids(y, "data.frame") at test-utils.R:16:5 2. └─spatialdataR::centroids(y, "data.frame") 3. └─spatialdataR (local) .local(x, ...) 4. └─spatialdataR:::.get_space_ax(y) 5. └─spatialdataR::axes(x, "name") 6. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`) [ FAIL 1 | WARN 8 | SKIP 0 | PASS 1288 ] Error: ! Test failures. Execution halted
R-universe testing / Build R-devel for Windows
NOTICE: windows-2025 requests are being redirected to windows-2025-vs2026 by June 15, 2026
R-universe testing / Build R-release for Windows
NOTICE: windows-2025 requests are being redirected to windows-2025-vs2026 by June 15, 2026
R-universe testing / Build R-oldrel for Windows
NOTICE: windows-2025 requests are being redirected to windows-2025-vs2026 by June 15, 2026

Artifacts

Produced during runtime
Name Size Digest
bioc-checks Expired
5.34 KB
sha256:b4f62cc77e9e9700e8b4e7e960eaa8d682eb590a8873e6dada1b07d7f745e851
package-linux-devel-x86_64 Expired
1.83 MB
sha256:c955dcd95cb3072374ee7523a9cacd9190e736ca86ca1320ef216d815a73d488
package-linux-release-x86_64 Expired
1.83 MB
sha256:d9d5a33ced54b761ae5d4740d87a96717d0985008f87ca609eea3e6b2f31ccce
package-macos-oldrel-arm64 Expired
1.82 MB
sha256:a6ab3ceb9325eef7ea4420c8abf303870c46d668f4d327b0f32a906ddbf884ff
package-macos-release-arm64 Expired
1.83 MB
sha256:489cc3a32939d9464cb1a2128d53f4f6257c4f85f16b5b52613dadfbdedeef5d
package-source Expired
1.4 MB
sha256:32a40ca44f673680d10c999d4fd57deff22338597cb6850039375aec9968a9ce
package-wasm-release Expired
1.67 MB
sha256:5316ea966baa7f0f859e292217092b4c856f0e981cab07ff99f6d46b53bd56e7
package-windows-devel Expired
1.83 MB
sha256:df179eceeb948dd33a5c7d4d2cf11facee1c2c7eb691308288da8856b8335ab8
package-windows-oldrel Expired
1.83 MB
sha256:737b35bf6361501007105c24e30ea9aeace8eca567880c8c44b5efd4d9076425
package-windows-release Expired
1.83 MB
sha256:3574558cecaf48ad37986c8d58395231c2ce3288581c489b47c59ac2f6b54708