Installation OK but failed to build vignettes * creating vignettes ... ERROR Setting r-universe rmarkdown theme... --- re-building ‘SpatialData.Rmd’ using rmarkdown Loading required package: BiocStyle Quitting from SpatialData.Rmd:265-285 [crop] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `.get_multiscale_scale()`: ! could not find function ".get_multiscale_scale" --- Backtrace: ▆ 1. ├─spatialdataR::crop(sd, xy) 2. └─spatialdataR::crop(sd, xy) 3. └─spatialdataR (local) .local(x, y, ...) 4. └─spatialdataR:::.lapplyLayer(...) 5. └─base::lapply(.ls, function(l) lapply(x[[l]], FUN, ...)) 6. └─spatialdataR (local) FUN(X[[i]], ...) 7. └─base::lapply(x[[l]], FUN, ...) 8. └─spatialdataR (local) FUN(X[[i]], ...) 9. ├─spatialdataR::crop(., y, j = j) 10. └─spatialdataR::crop(., y, j = j) 11. └─spatialdataR (local) .local(x, y, ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'SpatialData.Rmd' failed with diagnostics: could not find function ".get_multiscale_scale" --- failed re-building ‘SpatialData.Rmd’ SUMMARY: processing the following file failed: ‘SpatialData.Rmd’ Error: Vignette re-building failed. Execution halted If this is expected, consider precomputing your vignettes: https://ropensci.org/blog/2019/12/08/precompute-vignettes/

Check: examples, Result: ERROR Running examples in ‘spatialdataR-Ex.R’ failed The error most likely occurred in: > ### Name: centroids > ### Title: Spatial element centroids > ### Aliases: centroids centroids,ANY-method > ### centroids,SpatialDataLabel-method centroids,SpatialDataShape-method > ### centroids,SpatialDataPoint-method > > ### ** Examples > > x <- file.path("extdata", "blobs.zarr") > x <- system.file(x, package="spatialdataR") > x <- readSpatialData(x, tables=FALSE) > > centroids(label(x)) Error in .get_multiscale_scale(x) : could not find function ".get_multiscale_scale" Calls: centroids -> centroids -> .local Execution halted Check: tests, Result: ERROR Running ‘testthat.R’ [38s/38s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 12. ├─spatialdataR:::mask_i_by_j(.i, .j, how = how, table = t, ...) 13. └─spatialdataR:::mask_i_by_j(.i, .j, how = how, table = t, ...) 14. └─spatialdataR (local) .local(i, j, ...) ── Error ('test-utils.R:11:5'): centroids,sdLabel ────────────────────────────── Error in `.get_multiscale_scale(x)`: could not find function ".get_multiscale_scale" Backtrace: ▆ 1. ├─spatialdataR::centroids(y, "data.frame") at test-utils.R:11:5 2. └─spatialdataR::centroids(y, "data.frame") 3. └─spatialdataR (local) .local(x, ...) [ FAIL 9 | WARN 0 | SKIP 0 | PASS 1144 ] Error: ! Test failures. Execution halted

Check: examples, Result: ERROR Running examples in 'spatialdataR-Ex.R' failed The error most likely occurred in: > ### Name: centroids > ### Title: Spatial element centroids > ### Aliases: centroids centroids,ANY-method > ### centroids,SpatialDataLabel-method centroids,SpatialDataShape-method > ### centroids,SpatialDataPoint-method > > ### ** Examples > > x <- file.path("extdata", "blobs.zarr") > x <- system.file(x, package="spatialdataR") > x <- readSpatialData(x, tables=FALSE) > > centroids(label(x)) Error in .get_multiscale_scale(x) : could not find function ".get_multiscale_scale" Calls: centroids -> centroids -> .local Execution halted Check: tests, Result: ERROR Running 'testthat.R' [60s] Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: 12. ├─spatialdataR:::mask_i_by_j(.i, .j, how = how, table = t, ...) 13. └─spatialdataR:::mask_i_by_j(.i, .j, how = how, table = t, ...) 14. └─spatialdataR (local) .local(i, j, ...) ── Error ('test-utils.R:11:5'): centroids,sdLabel ────────────────────────────── Error in `.get_multiscale_scale(x)`: could not find function ".get_multiscale_scale" Backtrace: ▆ 1. ├─spatialdataR::centroids(y, "data.frame") at test-utils.R:11:5 2. └─spatialdataR::centroids(y, "data.frame") 3. └─spatialdataR (local) .local(x, ...) [ FAIL 9 | WARN 0 | SKIP 0 | PASS 1144 ] Error: ! Test failures. Execution halted

Check: examples, Result: ERROR Running examples in ‘spatialdataR-Ex.R’ failed The error most likely occurred in: > ### Name: centroids > ### Title: Spatial element centroids > ### Aliases: centroids centroids,ANY-method > ### centroids,SpatialDataLabel-method centroids,SpatialDataShape-method > ### centroids,SpatialDataPoint-method > > ### ** Examples > > x <- file.path("extdata", "blobs.zarr") > x <- system.file(x, package="spatialdataR") > x <- readSpatialData(x, tables=FALSE) > > centroids(label(x)) Error in .get_multiscale_scale(x) : could not find function ".get_multiscale_scale" Calls: centroids -> centroids -> .local Execution halted Check: tests, Result: ERROR Running ‘testthat.R’ [46s/47s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 12. ├─spatialdataR:::mask_i_by_j(.i, .j, how = how, table = t, ...) 13. └─spatialdataR:::mask_i_by_j(.i, .j, how = how, table = t, ...) 14. └─spatialdataR (local) .local(i, j, ...) ── Error ('test-utils.R:11:5'): centroids,sdLabel ────────────────────────────── Error in `.get_multiscale_scale(x)`: could not find function ".get_multiscale_scale" Backtrace: ▆ 1. ├─spatialdataR::centroids(y, "data.frame") at test-utils.R:11:5 2. └─spatialdataR::centroids(y, "data.frame") 3. └─spatialdataR (local) .local(x, ...) [ FAIL 9 | WARN 0 | SKIP 0 | PASS 1144 ] Error: ! Test failures. Execution halted

Check: examples, Result: ERROR Running examples in 'spatialdataR-Ex.R' failed The error most likely occurred in: > ### Name: centroids > ### Title: Spatial element centroids > ### Aliases: centroids centroids,ANY-method > ### centroids,SpatialDataLabel-method centroids,SpatialDataShape-method > ### centroids,SpatialDataPoint-method > > ### ** Examples > > x <- file.path("extdata", "blobs.zarr") > x <- system.file(x, package="spatialdataR") > x <- readSpatialData(x, tables=FALSE) > > centroids(label(x)) Error in .get_multiscale_scale(x) : could not find function ".get_multiscale_scale" Calls: centroids -> centroids -> .local Execution halted Check: tests, Result: ERROR Running 'testthat.R' [63s] Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: 12. ├─spatialdataR:::mask_i_by_j(.i, .j, how = how, table = t, ...) 13. └─spatialdataR:::mask_i_by_j(.i, .j, how = how, table = t, ...) 14. └─spatialdataR (local) .local(i, j, ...) ── Error ('test-utils.R:11:5'): centroids,sdLabel ────────────────────────────── Error in `.get_multiscale_scale(x)`: could not find function ".get_multiscale_scale" Backtrace: ▆ 1. ├─spatialdataR::centroids(y, "data.frame") at test-utils.R:11:5 2. └─spatialdataR::centroids(y, "data.frame") 3. └─spatialdataR (local) .local(x, ...) [ FAIL 9 | WARN 0 | SKIP 0 | PASS 1144 ] Error: ! Test failures. Execution halted

Check: examples, Result: ERROR Running examples in 'spatialdataR-Ex.R' failed The error most likely occurred in: > ### Name: centroids > ### Title: Spatial element centroids > ### Aliases: centroids centroids,ANY-method > ### centroids,SpatialDataLabel-method centroids,SpatialDataShape-method > ### centroids,SpatialDataPoint-method > > ### ** Examples > > x <- file.path("extdata", "blobs.zarr") > x <- system.file(x, package="spatialdataR") > x <- readSpatialData(x, tables=FALSE) > > centroids(label(x)) Error in .get_multiscale_scale(x) : could not find function ".get_multiscale_scale" Calls: centroids -> centroids -> .local Execution halted Check: tests, Result: ERROR Running 'testthat.R' [67s] Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: 13. └─spatialdataR:::mask_i_by_j(.i, .j, how = how, table = t, ...) 14. └─spatialdataR (local) .local(i, j, ...) ── Error ('test-utils.R:11:5'): centroids,sdLabel ────────────────────────────── <functionNotFoundError/objectNotFoundError/error/condition> Error in `.get_multiscale_scale(x)`: could not find function ".get_multiscale_scale" Backtrace: ▆ 1. ├─spatialdataR::centroids(y, "data.frame") at test-utils.R:11:5 2. └─spatialdataR::centroids(y, "data.frame") 3. └─spatialdataR (local) .local(x, ...) [ FAIL 9 | WARN 8 | SKIP 0 | PASS 1144 ] Error: ! Test failures. Execution halted

Check: examples, Result: ERROR Running examples in ‘spatialdataR-Ex.R’ failed The error most likely occurred in: > ### Name: centroids > ### Title: Spatial element centroids > ### Aliases: centroids centroids,ANY-method > ### centroids,SpatialDataLabel-method centroids,SpatialDataShape-method > ### centroids,SpatialDataPoint-method > > ### ** Examples > > x <- file.path("extdata", "blobs.zarr") > x <- system.file(x, package="spatialdataR") > x <- readSpatialData(x, tables=FALSE) > > centroids(label(x)) Error in .get_multiscale_scale(x) : could not find function ".get_multiscale_scale" Calls: centroids -> centroids -> .local Execution halted Check: tests, Result: ERROR Running ‘testthat.R’ [54s/53s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 12. ├─spatialdataR:::mask_i_by_j(.i, .j, how = how, table = t, ...) 13. └─spatialdataR:::mask_i_by_j(.i, .j, how = how, table = t, ...) 14. └─spatialdataR (local) .local(i, j, ...) ── Error ('test-utils.R:11:5'): centroids,sdLabel ────────────────────────────── Error in `.get_multiscale_scale(x)`: could not find function ".get_multiscale_scale" Backtrace: ▆ 1. ├─spatialdataR::centroids(y, "data.frame") at test-utils.R:11:5 2. └─spatialdataR::centroids(y, "data.frame") 3. └─spatialdataR (local) .local(x, ...) [ FAIL 9 | WARN 0 | SKIP 0 | PASS 1144 ] Error: ! Test failures. Execution halted

Check: examples, Result: ERROR Running examples in ‘spatialdataR-Ex.R’ failed The error most likely occurred in: > ### Name: centroids > ### Title: Spatial element centroids > ### Aliases: centroids centroids,ANY-method > ### centroids,SpatialDataLabel-method centroids,SpatialDataShape-method > ### centroids,SpatialDataPoint-method > > ### ** Examples > > x <- file.path("extdata", "blobs.zarr") > x <- system.file(x, package="spatialdataR") > x <- readSpatialData(x, tables=FALSE) > > centroids(label(x)) Error in .get_multiscale_scale(x) : could not find function ".get_multiscale_scale" Calls: centroids -> centroids -> .local Execution halted Check: tests, Result: ERROR Running ‘testthat.R’ [60s/58s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 13. └─spatialdataR:::mask_i_by_j(.i, .j, how = how, table = t, ...) 14. └─spatialdataR (local) .local(i, j, ...) ── Error ('test-utils.R:11:5'): centroids,sdLabel ────────────────────────────── <functionNotFoundError/objectNotFoundError/error/condition> Error in `.get_multiscale_scale(x)`: could not find function ".get_multiscale_scale" Backtrace: ▆ 1. ├─spatialdataR::centroids(y, "data.frame") at test-utils.R:11:5 2. └─spatialdataR::centroids(y, "data.frame") 3. └─spatialdataR (local) .local(x, ...) [ FAIL 9 | WARN 8 | SKIP 0 | PASS 1144 ] Error: ! Test failures. Execution halted

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