Use BiocGenerics::transform() #29
Bisaloor-universe.yaml
on: pull_request
R-universe testing
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Build source pkg and vignettes
4m 56s
R-universe testing
/
Build rOpenSci docs site
0s
R-universe testing
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Bioconductor Checks
3m 57s
Matrix: R-universe testing / linux
Matrix: R-universe testing / macos
Matrix: R-universe testing / wasm
Matrix: R-universe testing / windows
Annotations
1 error, 7 warnings, and 3 notices
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R-universe testing / Build source pkg and vignettes:
spatialdataR#L0
Installation OK but failed to build vignettes
* creating vignettes ... ERROR
Setting r-universe rmarkdown theme...
--- re-building ‘SpatialData.Rmd’ using rmarkdown
Loading required package: BiocStyle
Quitting from SpatialData.Rmd:169-184 [data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `vapply()`:
! values must be length 3,
but FUN(X[[1]]) result is length 0
---
Backtrace:
▆
1. └─base::vapply(l, dim, integer(3))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'SpatialData.Rmd' failed with diagnostics:
values must be length 3,
but FUN(X[[1]]) result is length 0
--- failed re-building ‘SpatialData.Rmd’
SUMMARY: processing the following file failed:
‘SpatialData.Rmd’
Error: Vignette re-building failed.
Execution halted
If this is expected, consider precomputing your vignettes: https://ropensci.org/blog/2019/12/08/precompute-vignettes/
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R-universe testing / Build R-release for MacOS:
spatialdataR#L0
Check: files in ‘vignettes’, Result: WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
‘refs.bib’ ‘schematic.png’ ‘SpatialData.Rmd’
Check: package vignettes, Result: WARNING
Directory 'inst/doc' does not exist.
Package vignette without corresponding single PDF/HTML:
‘SpatialData.Rmd’
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R-universe testing / Build R-oldrel for Windows:
spatialdataR#L0
Check: files in 'vignettes', Result: WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
'SpatialData.Rmd' 'refs.bib' 'schematic.png'
Check: package vignettes, Result: WARNING
Directory 'inst/doc' does not exist.
Package vignette without corresponding single PDF/HTML:
'SpatialData.Rmd'
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R-universe testing / Build R-oldrel for MacOS:
spatialdataR#L0
Check: files in ‘vignettes’, Result: WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
‘refs.bib’ ‘schematic.png’ ‘SpatialData.Rmd’
Check: package vignettes, Result: WARNING
Directory 'inst/doc' does not exist.
Package vignette without corresponding single PDF/HTML:
‘SpatialData.Rmd’
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R-universe testing / Build R-release for Windows:
spatialdataR#L0
Check: files in 'vignettes', Result: WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
'SpatialData.Rmd' 'refs.bib' 'schematic.png'
Check: package vignettes, Result: WARNING
Directory 'inst/doc' does not exist.
Package vignette without corresponding single PDF/HTML:
'SpatialData.Rmd'
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R-universe testing / Build R-release for Linux:
spatialdataR#L0
Check: files in ‘vignettes’, Result: WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
‘refs.bib’ ‘schematic.png’ ‘SpatialData.Rmd’
Check: package vignettes, Result: WARNING
Directory 'inst/doc' does not exist.
Package vignette without corresponding single PDF/HTML:
‘SpatialData.Rmd’
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R-universe testing / Build R-devel for Windows:
spatialdataR#L0
Check: files in 'vignettes', Result: WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
'SpatialData.Rmd' 'refs.bib' 'schematic.png'
Check: package vignettes, Result: WARNING
Directory 'inst/doc' does not exist.
Package vignette without corresponding single PDF/HTML:
'SpatialData.Rmd'
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R-universe testing / Build R-devel for Linux:
spatialdataR#L0
Check: files in ‘vignettes’, Result: WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
‘refs.bib’ ‘schematic.png’ ‘SpatialData.Rmd’
Check: package vignettes, Result: WARNING
Directory 'inst/doc' does not exist.
Package vignette without corresponding single PDF/HTML:
‘SpatialData.Rmd’
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R-universe testing / Build R-oldrel for Windows
NOTICE: windows-2025 requests are being redirected to windows-2025-vs2026 by June 15, 2026
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R-universe testing / Build R-release for Windows
NOTICE: windows-2025 requests are being redirected to windows-2025-vs2026 by June 15, 2026
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R-universe testing / Build R-devel for Windows
NOTICE: windows-2025 requests are being redirected to windows-2025-vs2026 by June 15, 2026
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