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call it a night... #543

call it a night...

call it a night... #543

Triggered via push May 8, 2026 21:52
Status Failure
Total duration 6m 27s
Artifacts 2

check-bioc.yml

on: push
Matrix: build-check
docker-build-and-push
docker-build-and-push
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4 errors and 31 warnings
macOS-latest (devel)
Process completed with exit code 1.
macOS-latest (devel)
R CMD check found ERRORs
macOS-latest (devel)
Running examples in ‘SpatialData-Ex.R’ failed
ubuntu-latest (devel)
Process completed with exit code 1.
macOS-latest (devel)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (devel)
Undocumented arguments in Rd file 'SDattrs.Rd'
macOS-latest (devel)
Undocumented code objects:
macOS-latest (devel)
Subdirectory ‘demo’ contains no demos.
macOS-latest (devel)
Empty or missing file ‘demo/00Index’.
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/books/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/books/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/books/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
macOS-latest (devel)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (devel)
harfbuzz 14.2.0 is already installed and up-to-date. To reinstall 14.2.0, run: brew reinstall harfbuzz
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
ubuntu-latest (devel)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Artifacts

Produced during runtime
Name Size Digest
Linux-biocversion-devel-r-4.5-results Expired
3.22 MB
sha256:d9796209e34f9edad791a617587321fcfd51ec413f111436688e0ac1857f078d
macOS-biocversion-devel-r-4.5-results Expired
3.29 MB
sha256:8e52a65f046702fdbd1aee21411c4b25a3c6fbd079da1b74e966153bde266e38