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read AnnData-zarr tables directly (#130) #261

read AnnData-zarr tables directly (#130)

read AnnData-zarr tables directly (#130) #261

Triggered via push March 29, 2026 14:50
Status Failure
Total duration 1h 45m 36s
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check-bioc.yml

on: push
Matrix: build-check
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1 error and 29 warnings
ubuntu-latest (4.6)
Process completed with exit code 1.
ubuntu-latest (4.6)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
ubuntu-latest (4.6)
No files were found with the provided path: check. No artifacts will be uploaded.
macOS-latest (devel)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (devel)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (devel)
harfbuzz 13.2.1 is already installed and up-to-date. To reinstall 13.2.1, run: brew reinstall harfbuzz
ubuntu-latest (4.5)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (devel)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/workflows/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/data/experiment/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/data/annotation/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/bioc/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/books/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/workflows/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/data/experiment/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/data/annotation/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/bioc/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/workflows/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/data/experiment/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/data/annotation/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/bioc/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/books/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/workflows/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/data/experiment/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/data/annotation/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.23/bioc/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/windows/contrib/4.7:
windows-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/windows/contrib/4.7: