muscat/DESCRIPTION at main · HelenaLC/muscat · GitHub

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Package: muscat
Title: Multi-sample multi-group scRNA-seq data analysis tools
Description: `muscat` provides various methods and visualization tools
    for DS analysis in multi-sample, multi-group, multi-(cell-)subpopulation
    scRNA-seq data, including cell-level mixed models and methods based on
    aggregated “pseudobulk” data, as well as a flexible simulation platform
    that mimics both single and multi-sample scRNA-seq data.
Type: Package
Version: 1.26.0
Depends: R (>= 4.6)
Authors@R: c(
	person("Helena L.", "Crowell",
	    role=c("aut", "cre"),
	    email="helena@crowell.eu",
	    comment=c(ORCID="0000-0002-4801-1767")),
	person("Pierre-Luc", "Germain", role="aut"),
	person("Charlotte", "Soneson", role="aut"),
	person("Anthony", "Sonrel", role="aut"),
	person("Jeroen", "Gilis", role="aut"),
	person("Davide", "Risso", role="aut"),
	person("Lieven", "Clement", role="aut"),
	person("Mark D.", "Robinson", role=c("aut", "fnd"),
	    email="mark.robinson@imls.uzh.ch"))
Imports:
	BiocParallel, blme,
	ComplexHeatmap,
	dplyr,
	edgeR,
	ggplot2, glmmTMB, grDevices, grid,
	limma, lmerTest, lme4,
	Matrix, MatrixGenerics, matrixStats, methods,
	progress,
	rlang,
	S4Vectors, scales, scater, scuttle, stats,
	SingleCellExperiment, SummarizedExperiment,
	variancePartition
Suggests:
	BiocStyle,
	countsimQC,
	DESeq2,
	AnnotationHub,
	ExperimentHub,
	iCOBRA,
	IHW,
	knitr,
	patchwork,
	phylogram,
	RColorBrewer,
	reshape2,
	rmarkdown,
	sctransform,
	statmod,
	stageR,
	testthat,
	tidyr,
	UpSetR
biocViews: ImmunoOncology, DifferentialExpression, Sequencing,
    SingleCell, Software, StatisticalMethod, Visualization
License: GPL-3
VignetteBuilder: knitr
RoxygenNote: 7.3.3
Encoding: UTF-8
URL: https://github.com/HelenaLC/muscat
BugReports: https://github.com/HelenaLC/muscat/issues