0.99.7

Author: HelenaLC

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: SpatialData.plot
 Title: SpatialData visualization
 Depends: R (>= 4.6), spatialdataR
-Version: 0.99.6
+Version: 0.99.7
 Description: Visualization suit for 'spatialdataR'. Current functionality 
     includes handling of multiscale 'images', visualizing 'labels', 'points', 
     and 'shapes'. For the latter, POINT, POLYGON, and MULTIPOLYGON geometries 
@@ -42,7 +42,6 @@ Suggests:
     knitr,
     magick,
     patchwork,
-    Rgraphviz,
     SpatialData.data,
     testthat,
     vdiffr,

NAMESPACE

@@ -11,8 +11,6 @@ importFrom(DelayedArray,realize)
 importFrom(MatrixGenerics,rowQuantiles)
 importFrom(S4Vectors,metadata)
 importFrom(SingleCellExperiment,colData)
-importFrom(SingleCellExperiment,int_colData)
-importFrom(SingleCellExperiment,int_metadata)
 importFrom(ggforce,geom_circle)
 importFrom(ggplot2,aes)
 importFrom(ggplot2,annotate)

inst/NEWS

@@ -1,3 +1,13 @@
+changes in version 0.99.7
+
+- added 'scalebar' display
+- near-comprehensive unit testing
+- default to random label coloring by instance
+- multi-scale adjustment (= mapping to physical space)
+- address R CMD check notes/warnings toward Bioc submission
+- support for 3D (z) and 4D (t) through slicing or max-projection
+- drop various code bits in favor of new 'spatialdataR' functionality
+
 changes in version 0.99.6
 
 - renaming of 'SpatialData' classes

tests/testthat/test-plotImage.R

@@ -1,6 +1,5 @@
 require(ggplot2, quietly=TRUE)
 require(spatialdataR, quietly=TRUE)
-require(SpatialData.data, quietly=TRUE)
 
 x <- file.path("extdata", "blobs.zarr")
 x <- system.file(x, package="spatialdataR")